Job Description P07003 Confidence 31.59% Date Thu Jan 5 10:59:55 GMT 2012 Rank 177 Aligned Residues 194 % Identity 14% Template c1tmoA_ PDB info PDB header:oxidoreductase Chain: A: PDB Molecule:trimethylamine n-oxide reductase; PDBTitle: trimethylamine n-oxide reductase from shewanella massilia Resolution 2.50 Å

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		188	.	190	.	.	.	.	.	.	.	.	.	200							.	.	.	.	.	.	.	.	.	210	.	.	.	.						.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.		.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.
Predicted Secondary structure															.	.	.	.	.	.															.	.	.	.	.																						.
Query SS confidence															.	.	.	.	.	.															.	.	.	.	.																						.
Query Sequence		E	E	E	L	R	K	L	A	Q	L	L	R	Y	.	.	.	.	.	.	S	S	N	I	A	L	M	C	G	S	G	C	A	G	.	.	.	.	.	A	H	K	E	L	V	E	F	A	G	K	I	K	A	P	I	V	H	A	L	R	.	G	K	E	H	V	E	Y	D	N	P	Y	D	V	G	M	T	G	L	I	G
Query Conservation															.	.	.	.	.	.															.	.	.	.	.																						.
Alig confidence															.	.	.	.	.	.															.	.	.	.	.																						.
Template Conservation
Template Sequence		D	K	A	L	T	L	F	K	H	S	L	D	E	V	Q	T	Q	Y	G	P	S	G	L	H	A	G	Q	T	G	W	R	A	T	G	Q	L	H	S	S	T	S	H	M	Q	R	A	V	G	M	H	G	N	Y	V	K	K	I	G	D	Y	S	T	G	A	G	Q	T	I	L	P	Y	V	L	G	S	T	E	V	Y	A
Template Known Secondary structure																			T		G	G	G											S		T	T	T												T	T				B						S	S	S	T	T									T	S	S			T	T	S
Template Predicted Secondary structure
Template SS confidence
		89	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.
		256	.	.	.	260	.		.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.																						.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.		.	.	.	.	.	.	.	.	310
Predicted Secondary structure								.																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																		.										.	.
Query SS confidence								.																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																		.										.	.
Query Sequence		F	S	S	G	F	H	.	T	M	M	N	A	D	T	L	V	L	L	G	T	Q	F	P	Y	R	A	F	Y	P	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	D	A	K	I	I	Q	I	D	I	N	P	A	S	I	G	A	H	.	S	K	V	D	M	A	L	V	G	.	.
Query Conservation								.																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																		.										.	.
Alig confidence								.																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																		.										.	.
Template Conservation
Template Sequence		Q	G	T	S	W	P	L	I	L	E	H	S	D	T	I	V	L	W	S	N	D	P	Y	K	N	L	Q	V	G	W	N	A	E	T	H	E	S	F	A	Y	L	A	Q	L	K	E	K	V	K	Q	G	K	I	R	V	I	S	I	D	P	V	V	T	K	T	Q	A	Y	L	G	C	E	Q	L	Y	V	N	P	Q	T
Template Known Secondary structure														S						S							T	S			S	S	B				T															T	S	S							S	S									T								T	T
Template Predicted Secondary structure
Template SS confidence
		169	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.
		311	.	.	.	.	.	.	.	.	320	.	.	.	.	.		.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.										.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380
Predicted Secondary structure																	.																														.	.	.	.	.	.	.	.	.
Query SS confidence																	.																														.	.	.	.	.	.	.	.	.
Query Sequence		D	I	K	S	T	L	R	A	L	L	P	L	V	E	E	.	K	A	D	R	K	F	L	D	K	A	L	E	D	Y	R	D	A	R	K	G	L	D	D	L	A	K	P	S	E	.	.	.	.	.	.	.	.	.	K	A	I	H	P	Q	Y	L	A	Q	Q	I	S	H	F	A	A	D	D	A	I	F	T	C	D	V
Query Conservation																	.																														.	.	.	.	.	.	.	.	.
Alig confidence																	.																														.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		D	V	T	L	M	L	A	I	A	H	E	M	I	S	K	K	L	Y	D	D	K	F	I	Q	G	Y	S	L	G	F	E	E	F	V	P	Y	V	M	G	T	K	D	G	V	A	K	T	P	E	W	A	A	P	I	C	G	V	E	A	H	V	I	R	D	L	A	K	T	L	V	K	G	R	T	Q	F	M	M	G	W
Template Known Secondary structure																T	T		S																					T	T	T	T	S													T																S								S
Template Predicted Secondary structure
Template SS confidence
		249	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.
		381
Predicted Secondary structure
Query SS confidence
Query Sequence		G
Query Conservation
Alig confidence
Template Conservation
Template Sequence		C
Template Known Secondary structure		G
Template Predicted Secondary structure
Template SS confidence
		329

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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