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Job DescriptionP07003
Confidence100.00%DateThu Jan 5 10:59:55 GMT 2012
Rank2Aligned Residues566
% Identity29%Templatec1powA_
PDB info PDB header:oxidoreductase(oxygen as acceptor)Chain: A: PDB Molecule:pyruvate oxidase; PDBTitle: the refined structures of a stabilized mutant and of wild-type2 pyruvate oxidase from lactobacillus plantarum
Resolution2.50 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   2.......10.........20.........30........ .40.........50.........60.........70.........80
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Query Sequence  KQTVAAYIAKTLESAGVKRIWGVTGDSLNGLSDSLNR. MGTIEWMSTRHEEVAAFAAGAEAQLSGELAVCAGSCGPGNLH
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Template Sequence  NILAGAAVIKVLEAWGVDHLYGIPGGSINSIMDALSAERDRIHYIQVRHEEVGAMAAAADAKLTGKIGVCFGSAGPGGTH
Template Known Secondary structure  TT




GGGTTTTS
SSSS

TTT
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   10.........20.........30.........40.........50.........60.........70.........80.........
 
   81........90.........100.........110.........120.........130.........140.........150.........160
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Query Sequence  LINGLFDCHRNHVPVLAIAAHIPSSEIGSGYFQETHPQELFRECSHYCELVSSPEQIPQVLAIAMRKAVLNRGVSVVVLP
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Template Sequence  LMNGLYDAREDHVPVLALIGQFGTTGMNMDTFQEMNENPIYADVADYNVTAVNAATLPHVIDEAIRRAYAHQGVAVVQIP
Template Known Secondary structure  TTT



TTTTTS

TT



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   90.........100.........110.........120.........130.........140.........150.........160.........
 
   161........170.........180.. .......190.........200.........210.........220.........230........
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Query Sequence  GDVALKPAPEGATMHWYHAPQP. . VVTPEEEELRKLAQLLRYSSNIALMCGSGCAGAHKELVEFAGKIKAPIVHALRGKE
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Template Sequence  VDLPWQQIPAEDWYASANSYQTPLLPEPDVQAVTRLTQTLLAAERPLIYYGIGARKAGKELEQLSKTLKIPLMSTYPAKG
Template Known Secondary structure  TTGGGSGGG



GGG









T
SS
GGGGGGT


GGGTT
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   170.........180.........190.........200.........210.........220.........230.........240.........
 
   239240.........250.........260.........270.........280. ........290.........300.........310.....
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Query Sequence  HVEYDNPYDVGMTGLIGFSSGFHTMMNADTLVLLGTQFPYRAF. . . YPTDAKIIQIDINPASIGAHSKVDMALVGDIKST
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Template Sequence  IVADRYPAYLGSANRVAQKPANEALAQADVVLFVGNNYPFAEVSKAFKNTRYFLQIDIDPAKLGKRHKTDIAVLADAQKT
Template Known Secondary structure  SS
TT
TTB



SSS


SS


TTTTTTT
S
S
GGGTTSSS

S
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   250.........260.........270.........280.........290.........300.........310.........320.........
 
   316...320.........330.........340.........350.........360.........370.........380.........390.....
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Query Sequence  LRALLPLVEEKADRKFLDKALEDYRDARKGLDDLAKPSEKAIHPQYLAQQISHFAADDAIFTCDVGTPTVWAARYLKMNG
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Template Sequence  LAAILAQVSERESTPWWQANLANVKNWRAYLASLEDKQEGPLQAYQVLRAVNKIAEPDAIYSIDVGDINLNANRHLKLTP
Template Known Secondary structure  T






T

SSB



TT

SS



T
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   330.........340.........350.........360.........370.........380.........390.........400.........
 
   396...400.........410.........420.........430.........440.........450.........460.........470.....
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Query Sequence  KRRLLGSFNHGSMANAMPQALGAQATEPERQVVAMCGDGGFSMLMGDFLSVVQMKLPVKIVVFNNSVLGFVAMEMKAGGY
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Template Sequence  SNRHITSNLFATMGVGIPGAIAAKLNYPERQVFNLAGDGGASMTMQDLATQVQYHLPVINVVFTNCQYGFIKDEQEDTNQ
Template Known Secondary structure  T



SS

TTT
TTS
GGGTT


SB

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   410.........420.........430.........440.........450.........460.........470.........480.........
 
   476. ..480.........490.........500.........510...... ...520.........530.........540.........550..
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Query Sequence  LT. DGTELHDTNFARIAEACGITGIRVEKASEVDEALQRAFS. . IDGPVLVDVVVAKEELAIPPQIKLEQAKGFSLYMLR
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Template Sequence  NDFIGVEFNDIDFSKIADGVHMQAFRVNKIEQLPDVFEQAKAIAQHEPVLIDAVITGDRPLPAEKLRLDSAM. SSAADIE
Template Known Secondary structure  S


SSB




TT

BGGGTTTS








TTS



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   490.........500.........510.........520.........530.........540.........550.........560. .......
 
   553......560........
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Query Sequence  AIISGRGDEVIELAKT
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Template Sequence  AFKQRYEAQDLQPLST
Template Known Secondary structure  T
TT


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   569570.........580....
 
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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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