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Job DescriptionP07003
Confidence100.00%DateThu Jan 5 10:59:55 GMT 2012
Rank8Aligned Residues521
% Identity25%Templatec1ozhD_
PDB info PDB header:lyaseChain: D: PDB Molecule:acetolactate synthase, catabolic; PDBTitle: the crystal structure of klebsiella pneumoniae acetolactate2 synthase with enzyme-bound cofactor and with an unusual3 intermediate.
Resolution2.00 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   3......10.........20.........30.........40.........50.........60.........70.........80..
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Query Sequence  QTVAAYIAKTLESAGVKRIWGVTGDSLNGLSDSLNRMGTIEWMSTRHEEVAAFAAGAEAQLSGELAVCAGSCGPGNLHLI
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Template Sequence  AHGADLVVSQLEAQGVRQVFGIPGAKIDKVFDSLLDS. SIRIIPVRHEANAAFMAAAVGRITGKAGVALVTSGPGCSNLI
Template Known Secondary structure  S
TT




GGGTS.SS
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   11........20.........30.........40....... ..50.........60.........70.........80.........
 
   83......90.........100.........110.........120.........130.........140.........150.. .......160.
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Query Sequence  NGLFDCHRNHVPVLAIAAHIPSSEIGSGYFQETHPQELFRECSHYCELVSSPEQIPQVLAIAMRKAVLNR. GVSVVVLPG
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Template Sequence  TGMATANSEGDPVVALGGAVK. . . . . . RADKSMDTVAMFSPVTKYAIEVTAPDALAEVVSNAFRAAEQGRPGSAFVSLPQ
Template Known Secondary structure  T



......GGG



GGG
S


GGGSSS

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   90.........100.........110 .........120.........130.........140.........150.........160...
 
   162.......170.........180.........190.........200.........210.. .......220.........230.........
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Query Sequence  DVALKPAPEGATMHWYHAPQPVVTPEEEELRKLAQLLRYSSNIALMCGSGC. . AGAHKELVEFAGKIKAPIVHALRGKEH
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Template Sequence  DVVDGPVSGK. . VLPASGAPQMGAAPDDAIDQVAKLIAQAKNPIFLLGLMASQPENSKALRRLLETSHIPVTSTYQAAGA
Template Known Secondary structure  S

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S






T
SS
GGGGSGGG



GGGTTT
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   170......... 180.........190.........200.........210.........220.........230.........240.......
 
   240.... .....250.........260.........270.........280. ........290.........300.........310.....
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Query Sequence  VEYDN. PYDVGMTGLIGFSSGFHTMMNADTLVLLGTQFPYRAF. . . YPTDAKIIQIDINPASIGAHSKVDMALVGDIKST
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Template Sequence  VNQDNFSRFAGRVGLFNNQAGDRLLQLADLVICIGYSPVEYEPAMWNSGNATLVHIDVLPAYEERNYTPDVELVGDIAGT
Template Known Secondary structure  S
GGG
TT
SSBTT

SS

GGGS
GGGT

S
SSS



BTTB

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   248.250.........260.........270.........280.........290.........300.........310.........320.......
 
   316...320.........330.........340.........350.........360.........370.........380.........390.....
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Query Sequence  LRALLPLVEEKADRKFLDKALEDYRDARKGLDDLAKPSEKAIHPQYLAQQISHFAADDAIFTCDVGTPTVWAARYLKMNG
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Template Sequence  LNKLAQNIDHRLVLSPQAAEILRDRQHQRE. . . LLDLNQFALHPLRIVRAMQDIVNSDVTLTVDMGSFHIWIARYLYTFR
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S




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SSB


TT

SSTGGG

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   328.330.........340.........350....... ..360.........370.........380.........390.........400....
 
   396...400.........410.........420.........430.........440.........450.........460.........470.....
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Query Sequence  KRRLLGSFNHGSMANAMPQALGAQATEPERQVVAMCGDGGFSMLMGDFLSVVQMKLPVKIVVFNNSVLGFVAMEMKAGGY
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Template Sequence  ARQVMISNGQQTMGVALPWAIGAWLVNPERKVVSVSGDGGFLQSSMELETAVRLKANVLHLIWVDNGYNMVAIQEEKKYQ
Template Known Secondary structure 
S


TT

TT
STTS
TTT


SB
S
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   410.........420.........430.........440.........450.........460.........470.........480.........
 
   476...480.........490.........500.........510.........520.........530.....
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Query Sequence  LTDGTELHDTNFARIAEACGITGIRVEKASEVDEALQRAFSIDGPVLVDVVVAKEELAIP
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Template Sequence  RLSGVEFGPMDFKAYAESFGAKGFAVESAEALEPTLRAAMDVDGPAVVAIPVDYRDNPLL
Template Known Secondary structure  S

S
B




TTTS

STTT
SS
B

TT
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   490.........500.........510.........520.........530.........540.........
 
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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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