Return to main results Retrieve Phyre Job Id

Job DescriptionP07003
Confidence100.00%DateThu Jan 5 10:59:55 GMT 2012
Rank19Aligned Residues512
% Identity20%Templatec1ovmC_
PDB info PDB header:lyaseChain: C: PDB Molecule:indole-3-pyruvate decarboxylase; PDBTitle: crystal structure of indolepyruvate decarboxylase from2 enterobacter cloacae
Resolution2.65 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   3......10.........20.........30.........40.........50.........60.........70.........80..
Predicted Secondary structure 





















Query SS confidence 















































































Query Sequence  QTVAAYIAKTLESAGVKRIWGVTGDSLNGLSDSLNRMGTIEWMSTRHEEVAAFAAGAEAQLSGELAVCAGSCGPGNLHLI
Query Conservation   
 

 
   
   

  


 

     
  

     
  
    
  
   
 
 

 

   

  
 


  
  
Alig confidence 
































































.













Template Conservation   
 

 
   
   

  


 

     
  

     
  
    
  
   
 



 

  . 
  
 


  
  
Template Sequence  YCVADYLLDRLTDCGADHLFGVPGDYNLQFLDHVIDSPDICWVGCANELNASYAADGYARCKGFA. ALLTTFGVGELSAM
Template Known Secondary structure 
BTT




GGG
SS

SSS
.TTT
Template Predicted Secondary structure 



















.

Template SS confidence 















































































   5....10.........20.........30.........40.........50.........60......... 70.........80...
 
   83......90.........100.........110.... .....120.........130.........140.........150....
Predicted Secondary structure 














........










Query SS confidence 































. . . . . . . .







































Query Sequence  NGLFDCHRNHVPVLAIAAHIPSSEIGSGYFQE. . . . . . . . THPQELFRECSHYCELVSSPEQIPQVLAIAMRKAVLNRGV
Query Conservation    
  
     


 
 
            
 ........ 
   
     
          
   
  
   
    

Alig confidence 































........




































.

Template Conservation    
  
     


 
 
                                
                          .

Template Sequence  NGIAGSYAEHVPVLHIVGAPGTAAQQRGELLHHTLGDGEFRHFYHMSEPITVAQAVLTEQNACYEIDRVLTTMLRER. RP
Template Known Secondary structure  TT



T


TTS
SSS


TGGG
S

TTTT.

Template Predicted Secondary structure 






























.

Template SS confidence 















































































   84.....90.........100.........110.........120.........130.........140.........150.........160 ..
 
   155....160.........170.........180.........190.........200.........210... ......220.........230..
Predicted Secondary structure 






























..






Query SS confidence 


























































. .


















Query Sequence  SVVVLPGDVALKPAPEGATMHWYHAPQPVVTPEEEELRKLAQLLRYSSNIALMCGSGCA. . GAHKELVEFAGKIKAPIVH
Query Conservation 
 
 

 

                                  
  






 
 
  .. 
   
  


    

  
Alig confidence 


























































..


















Template Conservation 
 
 

 

                                  
  





  
 
     
   
  


    

  
Template Sequence  GYLMLPADVAKKAATPPVNALTHKQAHADSACLKAFRDAAENKLAMSKRTALLADFLVLRHGLKHALQKWVKEVPMAHAT
Template Known Secondary structure  SB



SS









T
SS
TT
S

Template Predicted Secondary structure 






































Template SS confidence 















































































   163......170.........180.........190.........200.........210.........220.........230.........240..
 
   233......240.........250. ........260.........270.........280. ........290.........300......
Predicted Secondary structure 
















.
















.....














Query SS confidence 


















.





























. . . . .
























Query Sequence  ALRGKEHVEYDNPYDVGMT. GLIGFSSGFHTMMNADTLVLLGTQFPYRAF. . . . . YPTDAKIIQIDINPASIGAHSKVDM
Query Conservation 
    
     

   
  .
          
   
 

 

        .....       
 

 
            
Alig confidence 


















.





























.....
























Template Conservation 
    
 
    
   
              
  

 

 

                    
 

 
            
Template Sequence  MLMGKGIFDERQAGFYGTYSGSASTGAVKEAIEGADTVLCVGTRFTDTLTAGFTHQLTPAQTIEVQPHAARVGDVWFTGI
Template Known Secondary structure 
TTTTTSS
TTSTT





GGGS
TSSS



TTTTTTT




TTT
SSTTS
Template Predicted Secondary structure 





















































Template SS confidence 















































































   243......250.........260.........270.........280.........290.........300.........310.........320..
 
   307..310.........320.........330.........340.........350.........360.........370.........380......
Predicted Secondary structure 
























Query SS confidence 















































































Query Sequence  ALVGDIKSTLRALLPLVEEKADRKFLDKALEDYRDARKGLDDLAKPSEKAIHPQYLAQQISHFAADDAIFTCDVGTPTVW
Query Conservation      
    
  
                                              
   
    
   
 
     
Alig confidence 












...........................







































Template Conservation          
   
...........................                   
        

  
 
     
Template Sequence  PMNQAIETLVELC. . . . . . . . . . . . . . . . . . . . . . . . . . . KQHVHAPDGSLTQENFWRTLQTFIRPGDIILADQGTSAFG
Template Known Secondary structure 
...........................S




SB



TT

TT
Template Predicted Secondary structure 
...........................

















Template SS confidence 















































































   323......330..... ....340.........350.........360.........370.....
 
   387..390.........400.........410.........420.........430.........440.........450.........460......
Predicted Secondary structure 
































Query SS confidence 















































































Query Sequence  AARYLKMNGKRRLLGSFNHGSMANAMPQALGAQATEPERQVVAMCGDGGFSMLMGDFLSVVQMKLPVKIVVFNNSVLGFV
Query Conservation           
           

     



 

 
   

 
 




     

 

      
 


 

   
  
Alig confidence 




.









































































Template Conservation       .               

  
  






 
   

 
 




     

 

      
 


 

      
Template Sequence  AIDLR. LPADVNFIVQPLWGSIGYTLAAAFGAQTACPNRRVIVLTGDGAAQLTIQELGSMLRDKQHPIILVLNNEGYTVE
Template Known Secondary structure  TT

.

SS


TTT

TT
TTS
TTTTT


SSS
Template Predicted Secondary structure 

.




























Template SS confidence 















































































   390.... .....400.........410.........420.........430.........440.........450.........460........
 
   467..470.........480.........490..... ....500.........510.........520.........530.........540..
Predicted Secondary structure 

















....




















Query SS confidence 




























. . . .














































Query Sequence  AMEMKAGGYLTDGTELHDTNFARIAEACG. . . . ITGIRVEKASEVDEALQRAFSIDGPVLVDVVVAKEELAIPPQIKLEQ
Query Conservation                     
   

 
 
....     
    

  

  
    

 



 

      
       
Alig confidence 



...





















....



































..








Template Conservation      ...            
    
 
 
         
    

  

  
    

 



 

   .. 
       
Template Sequence  RAIH. . . GAEQRYNDIALWNWTHIPQALSLDPQSECWRVSEAEQLADVLEKVAHHERLSLIEVMLPKAD. . IPPLLGALT
Template Known Secondary structure  S...
TT
GGG





GGGSTTTS
SS


BTT
SS

TT
..

Template Predicted Secondary structure 
...



























..
Template SS confidence 















































































   469470.. .......480.........490.........500.........510.........520.........530.... .....540...
 
   543......
Predicted Secondary structure 
Query SS confidence 






Query Sequence  AKGFSLY
Query Conservation         
Alig confidence 






Template Conservation        
Template Sequence  KALEACN
Template Known Secondary structure 
Template Predicted Secondary structure 

Template SS confidence 






   544.....550
 
Download:Text version FASTA pairwise alignment 3D Model in PDB format

View in Jmol

Send structure to FirstGlance for more viewing options


Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions