Job Description P07003 Confidence 98.09% Date Thu Jan 5 10:59:55 GMT 2012 Rank 88 Aligned Residues 248 % Identity 12% Template c1ni4D_ PDB info PDB header:oxidoreductase Chain: D: PDB Molecule:pyruvate dehydrogenase e1 component: beta PDBTitle: human pyruvate dehydrogenase Resolution 1.95 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20			.	.	.	.						.	.	.	.	.	30	.	.	.	.	.	.	.	.	.			40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.
Predicted Secondary structure																						.	.					.	.	.	.	.																.	.
Query SS confidence																						.	.					.	.	.	.	.																.	.
Query Sequence		M	K	Q	T	V	A	A	Y	I	A	K	T	L	E	S	A	G	V	K	R	.	.	I	W	G	V	.	.	.	.	.	T	G	D	S	L	N	G	L	S	D	S	L	N	R	M	.	.	G	T	I	E	W	M	S	T	R	H	E	E	V	A	A	F	A	A	G	A	E	A	Q	L	S	G	E	L	A	V	C	A
Query Conservation																						.	.					.	.	.	.	.																.	.
Alig confidence																						.	.					.	.	.	.	.																.	.																									.
Template Conservation																																																																										.
Template Sequence		L	Q	V	T	V	R	D	A	I	N	Q	G	X	D	E	E	L	E	R	D	E	K	V	F	L	L	G	E	E	V	A	Q	Y	D	G	A	Y	K	V	S	R	G	L	W	K	K	Y	G	D	K	R	I	I	D	T	P	I	S	E	X	G	F	A	G	I	A	V	G	A	A	X	A	.	G	L	R	P	I	C	E
Template Known Secondary structure																						T	T						T	T		S	T	T			T	T	S	T	T	T	T							T	T	T						S															T	.	T
Template Predicted Secondary structure																																																																										.
Template SS confidence
		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.		.	.	.	.	.	.	.
		72	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90								.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.		.	130	.	.	.	.	.	.	.	.	.	140	.	.	.
Predicted Secondary structure																					.	.	.	.	.	.	.																																							.
Query SS confidence																					.	.	.	.	.	.	.																																							.
Query Sequence		G	S	C	G	P	G	N	L	H	L	I	N	G	L	F	D	C	H	R	.	.	.	.	.	.	.	N	H	V	P	V	L	A	I	A	A	H	I	P	S	S	E	I	G	S	G	Y	F	Q	E	T	H	P	Q	E	L	F	R	E	C	S	H	Y	C	.	E	L	V	S	S	P	E	Q	I	P	Q	V	L	A	I
Query Conservation																					.	.	.	.	.	.	.																																							.
Alig confidence																					.	.	.	.	.	.	.																																							.						.	.	.	.
Template Conservation																																																																								.	.	.	.
Template Sequence		F	X	T	F	N	F	S	X	Q	A	I	D	Q	V	I	N	S	A	A	K	T	Y	Y	X	S	G	G	L	Q	P	V	P	I	V	F	R	G	P	N	G	A	S	A	G	V	A	A	Q	H	S	Q	C	F	A	A	W	Y	G	H	C	P	G	L	K	V	V	S	P	W	N	.	.	.	.	S	E	D	A	K	G
Template Known Secondary structure			S	S	G	G	G	G	G	G	T							T	T	T	T					T	T	S	S												S			S	S			G	G	G										T	S	T	T								S	.	.	.	.
Template Predicted Secondary structure																																																																								.	.	.	.
Template SS confidence
		80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.					150	.	.	.	.	.
		144	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.		.	210	.	.	.	.	.	.	.	.	.	220	.	.
Predicted Secondary structure																																																																			.
Query SS confidence																																																																			.
Query Sequence		A	M	R	K	A	V	L	N	R	G	V	S	V	V	V	L	P	G	D	V	A	L	K	P	A	P	E	G	A	T	M	H	W	Y	H	A	P	Q	P	V	V	T	P	E	E	E	E	L	R	K	L	A	Q	L	L	R	Y	S	S	N	I	A	L	M	C	.	G	S	G	C	A	G	A	H	K	E	L	V	E	F
Query Conservation																																																																			.
Alig confidence																																														.	.	.	.	.	.	.	.	.													.
Template Conservation																																														.	.	.	.	.	.	.	.	.
Template Sequence		L	I	K	S	A	I	R	D	N	N	P	V	V	V	L	E	N	E	L	X	Y	G	V	P	F	E	F	P	P	E	A	Q	S	K	D	F	L	I	P	I	G	K	A	K	.	.	.	.	.	.	.	.	.	I	E	R	Q	G	T	H	I	T	V	V	S	H	S	R	P	V	G	H	C	L	E	A	A	A	V	L
Template Known Secondary structure									S	S	S								T	T	T	T	T											S	T	T					T	T				.	.	.	.	.	.	.	.	.						S	S							S	T
Template Predicted Secondary structure																																														.	.	.	.	.	.	.	.	.
Template SS confidence
		156	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.										200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.
		223	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	G	K	I	K	A	P	I	V	H	A	L	R	G	K	E	H	V	E	Y	D	N	P	Y	D	V	G	M	T	G	L	I	G	F	S	S	G	F	H	T	M	M	N	A	D	T	L	V	L	L	G	T	Q	F
Query Conservation
Alig confidence					.							.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation					.							.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		S	K	E	.	G	V	E	C	E	V	.	.	.	.	.	.	.	.	.	.	.	.	.	I	N	X	R	T	I	R	P	X	D	X	E	T	I	E	A	S	V	X	K	T	N	H	L	V	T	V	E	G	G	W
Template Known Secondary structure				T	.	T						.	.	.	.	.	.	.	.	.	.	.	.	.								T														S							S	S
Template Predicted Secondary structure					.							.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		227	.	.		230	.	.	.	.	.														.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions