Job Description P07003 Confidence 100.00% Date Thu Jan 5 10:59:55 GMT 2012 Rank 9 Aligned Residues 513 % Identity 25% Template c1jscA_ PDB info PDB header:lyase Chain: A: PDB Molecule:acetohydroxy-acid synthase; PDBTitle: crystal structure of the catalytic subunit of yeast2 acetohydroxyacid synthase: a target for herbicidal3 inhibitors Resolution 2.60 Å

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		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
Predicted Secondary structure
Query SS confidence
Query Sequence		M	K	Q	T	V	A	A	Y	I	A	K	T	L	E	S	A	G	V	K	R	I	W	G	V	T	G	D	S	L	N	G	L	S	D	S	L	N	R	M	G	T	I	E	W	M	S	T	R	H	E	E	V	A	A	F	A	A	G	A	E	A	Q	L	S	G	E	L	A	V	C	A	G	S	C	G	P	G	N	L	H
Query Conservation
Alig confidence
Template Conservation
Template Sequence		V	G	L	T	G	G	Q	I	F	N	E	M	M	S	R	Q	N	V	D	T	V	F	G	Y	P	G	G	A	I	L	P	V	Y	D	A	I	H	N	S	D	K	F	N	F	V	L	P	K	H	E	Q	G	A	G	H	M	A	E	G	Y	A	R	A	S	G	K	P	G	V	V	L	V	T	S	G	P	G	A	T	N
Template Known Secondary structure		T	T		B												T	T										G	G	G											T	T	S						S	S																S	S								S	T					T
Template Predicted Secondary structure
Template SS confidence
		90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.
		81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.		.	.	.	.	.	.	.
Predicted Secondary structure																																																																										.
Query SS confidence																																																																										.
Query Sequence		L	I	N	G	L	F	D	C	H	R	N	H	V	P	V	L	A	I	A	A	H	I	P	S	S	E	I	G	S	G	Y	F	Q	E	T	H	P	Q	E	L	F	R	E	C	S	H	Y	C	E	L	V	S	S	P	E	Q	I	P	Q	V	L	A	I	A	M	R	K	A	V	L	N	R	.	G	V	S	V	V	V	L
Query Conservation																																																																										.
Alig confidence																																																																										.
Template Conservation
Template Sequence		V	V	T	P	M	A	D	A	F	A	D	G	I	P	M	V	V	F	T	G	Q	V	P	T	S	A	I	G	T	D	A	F	Q	E	A	D	V	V	G	I	S	R	S	C	T	K	W	N	V	M	V	K	S	V	E	E	L	P	L	R	I	N	E	A	F	E	I	A	T	S	G	R	P	G	P	V	L	V	D	L
Template Known Secondary structure		T											T												G	G	G	T	T	S			T	T								T	S	T	T	S	S							S	G	G	G														S	S	S
Template Predicted Secondary structure
Template SS confidence
		170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.
		160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.				.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.
Predicted Secondary structure																																																								.	.	.
Query SS confidence																																																								.	.	.
Query Sequence		P	G	D	V	A	L	K	P	A	P	E	G	A	T	M	H	W	Y	H	A	P	Q	P	V	V	T	P	E	E	E	E	L	R	K	L	A	Q	L	L	R	Y	S	S	N	I	A	L	M	C	G	S	G	C	A	.	.	.	G	A	H	K	E	L	V	E	F	A	G	K	I	K	A	P	I	V	H	A	L	R	G
Query Conservation																																																								.	.	.
Alig confidence														.																																										.	.	.
Template Conservation														.
Template Sequence		P	K	D	V	T	A	A	I	L	R	N	P	.	I	P	T	K	T	T	L	P	S	A	Q	D	E	F	V	M	Q	S	I	N	K	A	A	D	L	I	N	L	A	K	K	P	V	L	Y	V	G	A	G	I	L	N	H	A	D	G	P	R	L	L	K	E	L	S	D	R	A	Q	I	P	V	T	T	T	L	Q	G
Template Known Secondary structure								S	B			S		.			G	G	G	G	S				T																			S	S							G	G	G	G	S	S	T	T												T	T							T	T	T
Template Predicted Secondary structure														.
Template SS confidence
		250	.	.	.	.	.	.	.	.	.	260	.		.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.
		237	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.															.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.
Predicted Secondary structure																																															.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																															.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		K	E	H	V	E	Y	D	N	P	Y	D	V	G	M	T	G	L	I	G	F	S	S	G	F	H	T	M	M	N	A	D	T	L	V	L	L	G	T	Q	F	P	Y	R	A	F	.	.	.	.	.	.	.	.	.	.	.	.	.	.	Y	P	T	D	A	K	I	I	Q	I	D	I	N	P	A	S	I	G	A	H	S
Query Conservation																																															.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																															.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		L	G	S	F	D	Q	E	D	P	K	S	L	D	M	L	G	M	H	G	C	A	T	A	N	L	A	V	Q	N	A	D	L	I	I	A	V	G	A	R	F	D	D	R	V	T	G	N	I	S	K	F	A	P	E	A	R	R	A	A	A	E	G	R	G	G	I	I	H	F	E	V	S	P	K	N	I	N	K	V	V
Template Known Secondary structure		T	T	S	S		T	T	S	T	T						S	T	T	S												S						S									S	S	G	G	G	S	S									T	T	S								S		G	G	G	T	T	S	S	S
Template Predicted Secondary structure
Template SS confidence
		338	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.
		303	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.				.	.	.	.	.	.	.	.
Predicted Secondary structure																																																																							.	.	.
Query SS confidence																																																																							.	.	.
Query Sequence		K	V	D	M	A	L	V	G	D	I	K	S	T	L	R	A	L	L	P	L	V	E	E	K	A	D	R	K	F	L	D	K	A	L	E	D	Y	R	D	A	R	K	G	L	D	D	L	A	K	P	S	E	K	A	I	H	P	Q	Y	L	A	Q	Q	I	S	H	F	A	A	.	.	.	D	D	A	I	F	T	C	D
Query Conservation																																																																							.	.	.
Alig confidence																																																						.																	.	.	.
Template Conservation																																																						.
Template Sequence		Q	T	Q	I	A	V	E	G	D	A	T	T	N	L	G	K	M	M	S	K	I	F	P	V	K	E	R	S	E	W	F	A	Q	I	N	K	W	K	K	E	Y	P	Y	A	Y	M	E	E	T	P	G	S	.	K	I	K	P	Q	T	V	I	K	K	L	S	K	V	A	N	D	T	G	R	H	V	I	V	T	T	G
Template Known Secondary structure				S					S										G	G	G	S																		T	T	S									S	S	S	.																		T		S
Template Predicted Secondary structure																																																						.
Template SS confidence
		418	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.		470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.
		380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	G	T	P	T	V	W	A	A	R	Y	L	K	M	N	G	K	R	R	L	L	G	S	F	N	H	G	S	M	A	N	A	M	P	Q	A	L	G	A	Q	A	T	E	P	E	R	Q	V	V	A	M	C	G	D	G	G	F	S	M	L	M	G	D	F	L	S	V	V	Q	M	K	L	P	V	K	I	V	V	F	N
Query Conservation
Alig confidence
Template Conservation
Template Sequence		V	G	Q	H	Q	M	W	A	A	Q	H	W	T	W	R	N	P	H	T	F	I	T	S	G	G	L	G	T	M	G	Y	G	L	P	A	A	I	G	A	Q	V	A	K	P	E	S	L	V	I	D	I	D	G	D	A	S	F	N	M	T	L	T	E	L	S	S	A	V	Q	A	G	T	P	V	K	I	L	I	L	N
Template Known Secondary structure		S	S										S				S	T	T							S	S			T	T														T	T	S															G	G	G								T
Template Predicted Secondary structure
Template SS confidence
		497	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.
		460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530
Predicted Secondary structure
Query SS confidence
Query Sequence		N	S	V	L	G	F	V	A	M	E	M	K	A	G	G	Y	L	T	D	G	T	E	L	H	D	T	N	F	A	R	I	A	E	A	C	G	I	T	G	I	R	V	E	K	A	S	E	V	D	E	A	L	Q	R	A	F	S	I	D	G	P	V	L	V	D	V	V	V	A	K	E
Query Conservation
Alig confidence										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		N	E	E	S	H	T	H	Q	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	N	P	D	F	I	K	L	A	E	A	M	G	L	K	G	L	R	V	K	K	Q	E	E	L	D	A	K	L	K	E	F	V	S	T	K	G	P	V	L	L	E	V	E	V	D	K	K
Template Known Secondary structure										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.													T	S							S															S	S
Template Predicted Secondary structure										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		577	.	.	580	.	.	.	.																.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.