Job Description P27254 Confidence 98.97% Date Thu Jan 5 11:43:35 GMT 2012 Rank 248 Aligned Residues 157 % Identity 17% Template c3tw8B_ PDB info PDB header:protein transport Chain: B: PDB Molecule:ras-related protein rab-35; PDBTitle: gef domain of dennd 1b in complex with rab gtpase rab35 Resolution 2.10 Å

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		55	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	R	L	G	V	T	G	T	P	G	A	G	K	S	T	F	L	E	A	F	G	M	L	L	I	R	E	G	L	K	V	A	V	I	A	V	D	P	S	S	P	V	T	G	G	S	I	L	G	D	K	T	R	M	N	D	L	A	R	A	E	A	A	F	I	R	P	V	P	S	S	G	H	L	G	G	A	S	Q	R
Query Conservation
Alig confidence																							.	.	.	.	.	.															.	.	.	.	.	.	.	.	.
Template Conservation																							.	.	.	.	.	.															.	.	.	.	.	.	.	.	.
Template Sequence		F	K	L	L	I	I	G	D	S	G	V	G	K	S	S	L	L	L	R	F	A	.	.	.	.	.	.	D	N	T	S	Y	I	T	T	I	G	V	D	F	K	.	.	.	.	.	.	.	.	.	I	R	T	V	E	I	N	G	E	K	V	K	L	Q	I	W	D	T	A	G	Q	E	R	F	R	T	I	T	S	T
Template Known Secondary structure										T	T	S											.	.	.	.	.	.	S					T	T	T	T	S					.	.	.	.	.	.	.	.	.							T	T											T	T	G	G	G		S	S			G	G
Template Predicted Secondary structure																							.	.	.	.	.	.															.	.	.	.	.	.	.	.	.
Template SS confidence
		9	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.							30	.	.	.	.	.	.	.	.	.	40	.	.	.										.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.
		135	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	R	E	L	M	L	L	C	E	A	A	G	Y	D	V	V	I	V	E	T	V	G	V	G	Q	S	E	T	E	V	A	R	M	V	D	C	F	I	S	L	Q	I	A	G	G	G	D	D	L	Q	G	I	K	K	G	L	M	E	V	A	D	L	I	V	I	N	K	D	D	G	D	N	H	T	N	V	A	I	A	R
Query Conservation
Alig confidence		.	.	.	.	.	.	.	.																									.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.																									.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	Y	Y	R	G	T	H	G	V	I	V	V	Y	D	V	T	S	A	E	S	F	V	N	V	K	.	.	.	.	.	.	.	.	.	.	.	.	.	.	R	W	L	H	E	I	N	Q	N	C	D	D	V	C	R	I	L	V	G	N	K	N	D	D	P	E	R	K	V	V	E	T	E	D
Template Known Secondary structure		.	.	.	.	.	.	.	.	G	G	T	T		S								T	T										.	.	.	.	.	.	.	.	.	.	.	.	.	.											T	T	S									T	T		G	G	G			S
Template Predicted Secondary structure		.	.	.	.	.	.	.	.																									.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
										77	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100															.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.
		215	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		H	M	Y	E	S	A	L	H	I	L	R	R	K	Y	D	E	W	Q	P	R	V	L	T	C	S	A	L	E	K	R	G	I	D	E	I	W	H	A	I	I	D	F	K
Query Conservation
Alig confidence										.	.	.	.	.	.	.	.	.
Template Conservation										.	.	.	.	.	.	.	.	.
Template Sequence		A	Y	K	F	A	G	Q	M	.	.	.	.	.	.	.	.	.	G	I	Q	L	F	E	T	S	A	K	E	N	V	N	V	E	E	M	F	N	C	I	T	E	L	V
Template Known Secondary structure										.	.	.	.	.	.	.	.	.	T							B	T	T	T	T	B	S
Template Predicted Secondary structure										.	.	.	.	.	.	.	.	.
Template SS confidence
		135	.	.	.	.	140	.	.										.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions