Job Description P27254 Confidence 98.84% Date Thu Jan 5 11:43:35 GMT 2012 Rank 266 Aligned Residues 149 % Identity 17% Template c3q85B_ PDB info PDB header:signaling protein Chain: B: PDB Molecule:gtp-binding protein rem 2; PDBTitle: crystal structure of rem2 g-domain -gtp analog complex Resolution 1.76 Å

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		55	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	R	L	G	V	T	G	T	P	G	A	G	K	S	T	F	L	E	A	F	G	M	L	L	I	R	E	G	L	K	V	A	V	I	A	V	D	P	S	S	P	V	T	G	G	S	I	L	G	D	K	T	R	M	N	D	L	A	R	A	E	A	A	F	I	R	P	V	P	S	S	G	H	L	G	G	A	S	Q	R
Query Conservation
Alig confidence																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																	.
Template Conservation																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																	.
Template Sequence		F	K	V	M	L	V	G	E	S	G	V	G	K	S	T	L	A	G	T	F	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	L	D	T	Y	E	R	R	I	M	V	D	K	E	E	V	T	L	I	V	Y	D	I	W	E	Q	L	Q	D	H	C	L	.
Template Known Secondary structure									S	T	T	S	S										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.												T	T															T	T				.
Template Predicted Secondary structure																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																	.
Template SS confidence
		116	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.																											.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.
		135	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	R	E	L	M	L	L	C	E	A	A	G	Y	D	V	V	I	V	E	T	V	G	V	G	Q	S	E	T	E	V	A	R	M	V	D	C	F	I	S	L	Q	I	A	G	G	G	D	D	L	Q	G	I	K	K	G	L	M	E	V	A	D	L	I	V	I	N	K	D	D	G	D	N	H	T	N	V	A	I	A	R
Query Conservation
Alig confidence		.	.	.	.	.	.	.	.																									.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.																									.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	Q	T	G	D	A	F	L	I	V	F	S	V	T	D	R	R	S	F	S	K	V	P	E	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	L	R	L	R	A	G	R	P	H	H	D	L	P	V	I	L	V	G	N	K	S	D	L	A	R	S	R	E	V	S	L	E	E
Template Known Secondary structure		.	.	.	.	.	.	.	.				S								T	T							T					.	.	.	.	.	.	.	.	.	.	.	.	.	.								S	T	T	S											T	T		G	G	G			S
Template Predicted Secondary structure		.	.	.	.	.	.	.	.																									.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
										187	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210															.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.
		215	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.
Predicted Secondary structure
Query SS confidence
Query Sequence		H	M	Y	E	S	A	L	H	I	L	R	R	K	Y	D	E	W	Q	P	R	V	L	T	C	S	A	L	E	K	R	G	I	D	E	I	W	H	A	I	I	D	F	K	T	A	L	T
Query Conservation
Alig confidence								.	.	.	.	.	.	.	.	.
Template Conservation								.	.	.	.	.	.	.	.	.
Template Sequence		G	R	H	L	A	G	.	.	.	.	.	.	.	.	.	T	L	S	C	K	H	I	E	T	S	A	A	L	H	H	N	T	R	E	L	F	E	G	A	V	R	Q	I	R	L	R	R
Template Known Secondary structure								.	.	.	.	.	.	.	.	.		T	T							B	T	T	T	T	B	S															T
Template Predicted Secondary structure								.	.	.	.	.	.	.	.	.
Template SS confidence
		245	.	.	.	.	250										.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions