Job Description P27254 Confidence 99.71% Date Thu Jan 5 11:43:35 GMT 2012 Rank 47 Aligned Residues 163 % Identity 16% Template c3pqcA_ PDB info PDB header:hydrolase Chain: A: PDB Molecule:probable gtp-binding protein engb; PDBTitle: crystal structure of thermotoga maritima ribosome biogenesis gtp-2 binding protein engb (ysxc/yiha) in complex with gdp Resolution 1.90 Å

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		53	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130
Predicted Secondary structure																																																																																.	.
Query SS confidence																																																																																.	.
Query Sequence		N	T	L	R	L	G	V	T	G	T	P	G	A	G	K	S	T	F	L	E	A	F	G	M	L	L	I	R	E	G	L	K	V	A	V	I	A	V	D	P	S	S	P	V	T	G	G	S	I	L	G	D	K	T	R	M	N	D	L	A	R	A	E	A	A	F	I	R	P	V	P	S	S	G	H	L	G	G	.	.
Query Conservation																																																																																.	.
Alig confidence																									.	.	.	.	.	.															.	.	.	.	.	.	.	.	.	.	.	.																								.	.
Template Conservation																									.	.	.	.	.	.															.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		L	K	G	E	V	A	F	V	G	R	S	N	V	G	K	S	S	L	L	N	A	L	F	.	.	.	.	.	.	N	R	K	I	A	F	V	S	K	T	P	G	K	T	.	.	.	.	.	.	.	.	.	.	.	.	R	S	I	N	F	Y	L	V	N	S	K	Y	Y	F	V	D	L	P	G	Y	G	Y	A	K	V
Template Known Secondary structure		T	T								B	T	T	S	S										.	.	.	.	.	.	T	S			S				S	S					.	.	.	.	.	.	.	.	.	.	.	.									T	T	T									B	S	S	S
Template Predicted Secondary structure																									.	.	.	.	.	.															.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		22	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.							.	.	.	.	.	50	.	.	.	.	.	.	.	.													.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.
									131	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	A	S	Q	R	A	R	E	L	M	L	L	C	E	A	A	G	Y	D	V	V	I	V	E	T	V	G	V	G	Q	S	E	T	E	V	A	R	M	V	D	C	F	I	S	L	Q	I	A	G	G	G	D	D	L	Q	G	I	K	K	G	L	M	E	V	A	D	L	I	V	I	N	K	D	D
Query Conservation		.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.																																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		S	K	K	E	R	M	L	W	K	R	L	V	E	D	Y	F	K	N	R	W	S	L	Q	M	V	F	L	L	V	D	G	R	I	P	P	Q	D	S	D	L	M	M	V	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	E	W	M	K	S	L	N	I	P	F	T	I	V	L	T	K	M	D
Template Known Secondary structure																					T	T										T	T	S											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.						T	T										G	G
Template Predicted Secondary structure																																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		84	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.																				.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.
		204	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	D	N	H	T	N	V	A	I	A	R	H	M	Y	E	S	A	L	H	I	L	R	R	K	Y	D	E	W	Q	P	R	V	L	T	C	S	A	L	E	K	R	G	I	D	E	I	W	H	A	I	I	D	F	K	T
Query Conservation
Alig confidence																					.	.	.	.	.	.
Template Conservation																					.	.	.	.	.	.
Template Sequence		K	V	K	M	S	E	R	A	K	K	L	E	E	H	R	K	V	F	S	.	.	.	.	.	.	K	Y	G	E	Y	T	I	I	P	T	S	S	V	T	G	E	G	I	S	E	L	L	D	L	I	S	T	L	L	K
Template Known Secondary structure		G	S		G	G	G														.	.	.	.	.	.	S	S			S							T	T	T		T	T
Template Predicted Secondary structure																					.	.	.	.	.	.
Template SS confidence
		145	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.							.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions