Job Description P27254 Confidence 99.69% Date Thu Jan 5 11:43:35 GMT 2012 Rank 53 Aligned Residues 221 % Identity 18% Template c3dmdA_ PDB info PDB header:transport protein Chain: A: PDB Molecule:signal recognition particle receptor; PDBTitle: structures and conformations in solution of the signal recognition2 particle receptor from the archaeon pyrococcus furiosus Resolution 2.21 Å

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		4	.	.	.	.	.	10	.	.	.	.	.	.	.	.			.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.													.	.	40	.	.	.	.	.	.	.	.	.	50													.	.	.	.	.	.	.
Predicted Secondary structure																	.	.																				.	.	.	.	.	.	.	.	.	.	.	.														.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																	.	.																				.	.	.	.	.	.	.	.	.	.	.	.														.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		E	A	T	L	A	E	S	I	R	R	L	R	Q	G	E	.	.	R	A	T	L	A	Q	A	M	T	L	V	E	S	R	H	P	R	H	Q	.	.	.	.	.	.	.	.	.	.	.	.	A	L	S	T	Q	L	L	D	A	I	M	P	Y	.	.	.	.	.	.	.	.	.	.	.	.	C	G	N	T	L	R	L
Query Conservation																	.	.																				.	.	.	.	.	.	.	.	.	.	.	.														.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																	.	.																				.	.	.	.	.	.	.	.	.	.	.	.														.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		D	K	A	L	D	E	L	E	I	D	L	L	E	A	D	V	A	L	E	V	V	D	A	L	R	E	K	I	K	Q	K	L	V	G	K	K	V	R	I	G	T	D	K	G	K	I	I	E	E	A	V	K	E	A	V	S	E	I	L	E	T	S	R	R	I	D	L	I	E	E	I	R	K	A	E	K	P	Y	V	I
Template Known Secondary structure														T	T	T																		T	T					T	T	S																		T			S											T	S		S
Template Predicted Secondary structure
Template SS confidence
		47	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.
		58	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	V	T	G	T	P	G	A	G	K	S	T	F	L	E	A	F	G	M	L	L	I	R	E	G	L	K	V	A	V	I	A	V	D	P	S	S	P	V	T	G	G	S	I	L	G	D	K	T	R	M	N	D	L	A	R	A	E	A	A	F	I	R	P	V	P	S	S	G	H	L	G	G	A	S	Q	R	A	R	E
Query Conservation
Alig confidence																																								.	.	.	.	.	.	.																								.	.	.
Template Conservation																																								.	.	.	.	.	.	.																								.	.	.
Template Sequence		M	F	V	G	F	N	G	S	G	K	T	T	T	I	A	K	L	A	N	W	L	K	N	H	G	F	S	V	V	I	A	A	S	D	T	F	R	A	.	.	.	.	.	.	.	G	A	I	E	Q	L	E	E	H	A	K	R	I	G	V	K	V	I	K	H	S	Y	G	.	.	.	A	D	P	A	A	V	A	Y	D
Template Known Secondary structure							T	T	S	S															T	T										T	T			.	.	.	.	.	.	.													T	T							S	T	T	.	.	.
Template Predicted Secondary structure																																								.	.	.	.	.	.	.																								.	.	.
Template SS confidence
		127	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.								.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.				.	.	190	.	.	.	.	.	.
		138	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.										.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.			.	.	.	.	.	.	.	200	.	.	.	.	.	.
Predicted Secondary structure																																.	.	.	.	.	.	.	.	.																										.	.
Query SS confidence																																.	.	.	.	.	.	.	.	.																										.	.
Query Sequence		L	M	L	L	C	E	A	A	G	Y	D	V	V	I	V	E	T	V	G	V	G	Q	S	E	T	E	V	A	R	M	.	.	.	.	.	.	.	.	.	V	D	C	F	I	S	L	Q	I	A	G	G	G	D	D	L	Q	G	I	K	K	G	L	M	E	.	.	V	A	D	L	I	V	I	N	K	D	D	G	D	N
Query Conservation																																.	.	.	.	.	.	.	.	.																										.	.
Alig confidence																																.	.	.	.	.	.	.	.	.																										.	.
Template Conservation
Template Sequence		A	I	Q	H	A	K	A	R	G	I	D	V	V	L	I	D	T	A	G	R	S	E	T	N	R	N	L	M	D	E	M	K	K	I	A	R	V	T	K	P	N	L	V	I	F	V	G	D	A	L	A	G	N	A	I	V	E	Q	A	R	Q	F	N	E	A	V	K	I	D	G	I	I	L	T	K	L	D	A	D	A
Template Known Secondary structure										T		S								S	S			S	S	S																S								T	T		T	T	T												S									S	G	G	G		S
Template Predicted Secondary structure
Template SS confidence
		197	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.
		207	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		H	T	N	V	A	I	A	R	H	M	Y	E	S	A	L	H	I	L	R	R	K	Y	D	E	W	Q	P	R	V	L	T	C	S	A	L	E	K	R	G	I	D	E	I
Query Conservation
Alig confidence																.	.	.	.	.	.	.	.	.	.	.	.	.							.	.
Template Conservation																.	.	.	.	.	.	.	.	.	.	.	.	.							.	.
Template Sequence		R	G	G	A	A	L	S	I	S	Y	V	I	D	A	.	.	.	.	.	.	.	.	.	.	.	.	.	P	I	L	F	V	G	.	.	V	G	Q	G	Y	D	D	L
Template Known Secondary structure		S												T		.	.	.	.	.	.	.	.	.	.	.	.	.							.	.		S	S	S	G	G	G
Template Predicted Secondary structure																.	.	.	.	.	.	.	.	.	.	.	.	.							.	.
Template SS confidence
		277	.	.	280	.	.	.	.	.	.	.	.	.	290														.	.	.	.	.	.			.	.	.	300	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions