Phyre 2 alignment of P27254 with c3dm5A

Job Description P27254
Confidence 99.78% Date Thu Jan 5 11:43:35 GMT 2012

Rank 30 Aligned Residues 285

% Identity 18% Template c3dm5A_

PDB info PDB header:rna binding protein, transport protein Chain: A: PDB Molecule:signal recognition 54 kda protein; PDBTitle: structures of srp54 and srp19, the two proteins assembling2 the ribonucleic core of the signal recognition particle3 from the archaeon pyrococcus furiosus.

Resolution 2.51 Å

	Insertion relative to template
	Deletion relative to template
	Catalytic residue from the CSA

Detailed help on interpreting your alignment

	4	.	.	.	.	.	10	.	.	.	.	.	.	.	.							.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.																.	50	.	.	.	.	.	.	.	.	.	60	.	.
Predicted Secondary structure																.	.	.	.	.	.																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																.	.	.	.	.	.																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence	E	A	T	L	A	E	S	I	R	R	L	R	Q	G	E	.	.	.	.	.	.	R	A	T	L	A	Q	A	M	T	L	V	E	S	R	H	P	R	H	Q	A	L	S	T	Q	L	L	D	A	I	M	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	P	Y	C	G	N	T	L	R	L	G	V	T	G	T
Query Conservation																.	.	.	.	.	.																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																.	.	.	.	.	.																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence	K	E	L	V	R	D	I	Q	R	A	L	I	Q	A	D	V	N	V	R	L	V	L	Q	L	T	R	E	I	Q	R	R	A	L	E	E	K	P	P	A	G	I	S	K	K	E	H	I	I	K	I	V	Y	E	E	L	T	K	F	L	G	T	E	A	K	P	I	E	I	K	E	K	P	T	I	L	L	M	V	G	I
Template Known Secondary structure														T	T																								T	T																			T	T	S	S								S	S	S
Template Predicted Secondary structure
Template SS confidence
	29	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.

	63	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	P	G	A	G	K	S	T	F	L	E	A	F	G	M	L	L	I	R	E	G	L	K	V	A	V	I	A	V	D	P	S	S	P	V	T	G	G	S	I	L	G	D	K	T	R	M	N	D	L	A	R	A	E	A	A	F	I	R	P	V	P	S	S	G	H	L	G	G	A	S	Q	R	A	R	E	L	M	L	L	C
Query Conservation
Alig confidence																														.	.	.													.	.	.	.																.	.	.
Template Conservation																														.	.	.													.	.	.	.																.	.	.
Template Sequence	Q	G	S	G	K	T	T	T	V	A	K	L	A	R	Y	F	Q	K	R	G	Y	K	V	G	V	V	C	S	D	.	.	.	T	W	R	P	G	A	Y	H	Q	L	R	Q	.	.	.	.	L	L	D	R	Y	H	I	E	V	F	G	N	P	Q	E	.	.	.	K	D	A	I	K	L	A	K	E	G	V	D	Y	F
Template Known Secondary structure	T	T	S	S														T	T	T										.	.	.		S	S	T									.	.	.	.			G	G	G	T							T	T		.	.	.
Template Predicted Secondary structure																														.	.	.													.	.	.	.																.	.	.
Template SS confidence
	109	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.				.	.	140	.	.	.	.	.	.	.	.	.					150	.	.	.	.	.	.	.	.	.	160	.	.	.	.				.	.	.	.	.	170	.	.	.	.	.	.	.	.

	143	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.										.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.			.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.
Predicted Secondary structure																										.	.	.	.	.	.	.	.	.																										.	.
Query SS confidence																										.	.	.	.	.	.	.	.	.																										.	.
Query Sequence	E	A	A	G	Y	D	V	V	I	V	E	T	V	G	V	G	Q	S	E	T	E	V	A	R	M	.	.	.	.	.	.	.	.	.	V	D	C	F	I	S	L	Q	I	A	G	G	G	D	D	L	Q	G	I	K	K	G	L	M	E	.	.	V	A	D	L	I	V	I	N	K	D	D	G	D	N	H	T	N	V	A
Query Conservation																										.	.	.	.	.	.	.	.	.																										.	.
Alig confidence																										.	.	.	.	.	.	.	.	.																										.	.
Template Conservation
Template Sequence	K	S	K	G	V	D	I	I	I	V	D	T	A	G	R	H	K	E	D	K	A	L	I	E	E	M	K	Q	I	S	N	V	I	H	P	H	E	V	I	L	V	I	D	G	T	I	G	Q	Q	A	Y	N	Q	A	L	A	F	K	E	A	T	P	I	G	S	I	I	V	T	K	L	D	G	S	A	K	G	G	G	A
Template Known Secondary structure			T	T		S										S	S																			S								G	G	G	G	G	G											S		T	T									S	S		S	S
Template Predicted Secondary structure
Template SS confidence
	179	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.

	212	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.		.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.		.	280	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																										.																											.
Query SS confidence																																										.																											.
Query Sequence	I	A	R	H	M	Y	E	S	A	L	H	I	L	R	R	K	Y	D	E	W	Q	P	R	V	L	T	C	S	A	L	E	K	R	G	I	D	E	I	W	H	A	.	I	I	D	F	K	T	A	L	T	A	S	G	R	L	Q	Q	V	R	Q	Q	Q	S	V	E	W	L	.	R	K	Q	T	E	E	E	V	L	N	H
Query Conservation																																										.																											.
Alig confidence								.	.	.	.	.	.	.	.	.	.	.	.	.									.	.												.																											.
Template Conservation								.	.	.	.	.	.	.	.	.	.	.	.	.									.	.
Template Sequence	L	S	A	V	A	A	T	.	.	.	.	.	.	.	.	.	.	.	.	.	G	A	P	I	K	F	I	G	.	.	T	G	E	K	I	D	D	I	E	P	F	D	P	P	R	F	V	S	R	L	L	G	L	G	D	I	Q	G	L	L	E	K	F	K	E	L	E	K	E	V	E	I	K	E	E	D	I	E	R	F
Template Known Secondary structure						T	T	.	.	.	.	.	.	.	.	.	.	.	.	.									.	.		S	S	S	T	T															T	T	T	T														T	T
Template Predicted Secondary structure								.	.	.	.	.	.	.	.	.	.	.	.	.									.	.
Template SS confidence
	259	260	.	.	.	.	.														.	.	.	.	270	.	.	.			.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.

	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	L	F	A	N	E	D	F	D	R	Y	Y	R	Q	T	L	L	A	V	K	N	N	T	L	S
Query Conservation
Alig confidence
Template Conservation
Template Sequence	L	R	G	K	F	T	L	K	D	M	Y	A	Q	L	E	A	M	R	K	M	G	P	I	S
Template Known Secondary structure		T	T																T	T
Template Predicted Secondary structure
Template SS confidence
	324	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server

Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]

© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys
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