Job Description P27254 Confidence 99.70% Date Thu Jan 5 11:43:35 GMT 2012 Rank 49 Aligned Residues 221 % Identity 16% Template c3b9qA_ PDB info PDB header:protein transport Chain: A: PDB Molecule:chloroplast srp receptor homolog, alpha subunit PDBTitle: the crystal structure of cpftsy from arabidopsis thaliana Resolution 1.75 Å

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		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.							.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.													.	.	.	.	.	.	.	.	60	.	.	.	.
Predicted Secondary structure																		.	.	.	.	.	.																																		.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																		.	.	.	.	.	.																																		.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		N	E	A	T	L	A	E	S	I	R	R	L	R	Q	G	E	.	.	.	.	.	.	R	A	T	L	A	Q	A	M	T	L	V	E	S	R	H	P	R	H	Q	A	L	S	T	Q	L	L	D	A	I	M	P	Y	C	.	.	.	.	.	.	.	.	.	.	.	.	G	N	T	L	R	L	G	V	T	G	T	P	G
Query Conservation																		.	.	.	.	.	.																																		.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																		.	.	.	.	.	.																																		.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		T	D	R	V	L	D	E	L	E	E	A	L	L	V	S	D	F	G	P	K	I	T	V	R	I	V	E	R	L	R	E	D	I	M	S	G	K	L	K	S	G	S	E	I	K	D	A	L	K	E	S	V	L	E	M	L	A	K	S	K	T	E	L	Q	L	G	F	R	K	P	A	V	I	M	I	V	G	V	N	G
Template Known Secondary structure																T	T																			T	T	S			S																						S					S	S	S										T	T
Template Predicted Secondary structure
Template SS confidence
		93	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.
		65	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	G	K	S	T	F	L	E	A	F	G	M	L	L	I	R	E	G	L	K	V	A	V	I	A	V	D	P	S	S	P	V	T	G	G	S	I	L	G	D	K	T	R	M	N	D	L	A	R	A	E	A	A	F	I	R	P	V	P	S	S	G	H	L	G	G	A	S	Q	R	A	R	E	L	M	L	L	C	E	A
Query Conservation
Alig confidence																													.	.	.																		.	.	.	.											.	.	.	.
Template Conservation																													.	.	.																		.	.	.	.											.	.	.	.
Template Sequence		G	G	K	T	T	S	L	G	K	L	A	H	R	L	K	N	E	G	T	K	V	L	M	A	A	G	D	.	.	.	T	F	R	A	A	A	S	D	Q	L	E	I	W	A	E	R	T	.	.	.	.	G	C	E	I	V	V	A	E	K	A	.	.	.	.	K	A	A	T	V	L	S	K	A	V	K	R	G	K	E
Template Known Secondary structure		S																T	T										.	.	.		S																.	.	.	.	T										.	.	.	.
Template Predicted Secondary structure																													.	.	.																		.	.	.	.											.	.	.	.
Template SS confidence
		175	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.				.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.					.	220	.	.	.	.	.	.	.	.					.	230	.	.	.	.	.	.	.	.	.	240	.	.	.
		145	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.																.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.			.	.	.	.	.	.	.	200	.	.	.	.	.	.	.
Predicted Secondary structure																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																										.	.
Query SS confidence																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																										.	.
Query Sequence		A	G	Y	D	V	V	I	V	E	T	V	G	V	G	Q	S	E	T	E	V	A	R	M	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	V	D	C	F	I	S	L	Q	I	A	G	G	G	D	D	L	Q	G	I	K	K	G	L	M	E	.	.	V	A	D	L	I	V	I	N	K	D	D	G	D	N	H
Query Conservation																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																										.	.
Alig confidence																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																										.	.
Template Conservation
Template Sequence		E	G	Y	D	V	V	L	C	D	T	S	G	R	L	H	T	N	Y	S	L	M	E	E	L	I	A	C	K	K	A	V	G	K	I	V	S	G	A	P	N	E	I	L	L	V	L	D	G	N	T	G	L	N	M	L	P	Q	A	R	E	F	N	E	V	V	G	I	T	G	L	I	L	T	K	L	D	G	S	A	R
Template Known Secondary structure		T	T		S										S	S																		T	T	S	T	T			S								G	G	G	G	G	G	G											T											S	S		S
Template Predicted Secondary structure
Template SS confidence
		246	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.
		208	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	N	V	A	I	A	R	H	M	Y	E	S	A	L	H	I	L	R	R	K	Y	D	E	W	Q	P	R	V	L	T	C	S	A	L	E	K	R	G	I	D	E	I
Query Conservation
Alig confidence													.	.	.	.	.	.	.	.	.	.	.	.	.									.	.
Template Conservation													.	.	.	.	.	.	.	.	.	.	.	.	.									.	.
Template Sequence		G	G	C	V	V	S	V	V	E	E	L	.	.	.	.	.	.	.	.	.	.	.	.	.	G	I	P	V	K	F	I	G	.	.	V	G	E	A	V	E	D	L
Template Known Secondary structure		T											.	.	.	.	.	.	.	.	.	.	.	.	.									.	.		S	S	S	G	G	G
Template Predicted Secondary structure													.	.	.	.	.	.	.	.	.	.	.	.	.									.	.
Template SS confidence
		326	.	.	.	330	.	.	.	.	.	.														.	.	.	340	.	.	.	.			.	.	.	.	.	350	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions