Job Description P27254 Confidence 99.67% Date Thu Jan 5 11:43:35 GMT 2012 Rank 60 Aligned Residues 237 % Identity 20% Template c2v3cC_ PDB info PDB header:signaling protein Chain: C: PDB Molecule:signal recognition 54 kda protein; PDBTitle: crystal structure of the srp54-srp19-7s.s srp rna complex2 of m. jannaschii Resolution 2.50 Å

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		4	.	.	.	.	.	10	.	.	.	.	.	.	.	.			.	20	.	.	.	.	.	.	.	.	.	30	.	.	.													.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.									.	.	.	.	.	.	.	.	60	.
Predicted Secondary structure																	.	.																.	.	.	.	.	.	.	.	.	.	.	.																			.	.	.	.	.	.	.	.
Query SS confidence																	.	.																.	.	.	.	.	.	.	.	.	.	.	.																			.	.	.	.	.	.	.	.
Query Sequence		E	A	T	L	A	E	S	I	R	R	L	R	Q	G	E	.	.	R	A	T	L	A	Q	A	M	T	L	V	E	S	R	H	.	.	.	.	.	.	.	.	.	.	.	.	P	R	H	Q	A	L	S	T	Q	L	L	D	A	I	M	P	Y	C	.	.	.	.	.	.	.	.	G	N	T	L	R	L	G	V	T	G
Query Conservation																	.	.																.	.	.	.	.	.	.	.	.	.	.	.																			.	.	.	.	.	.	.	.
Alig confidence																	.	.																.	.	.	.	.	.	.	.	.	.	.	.																			.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		K	E	V	I	K	D	I	Q	R	A	L	I	Q	A	D	V	N	V	K	L	V	L	K	M	S	K	E	I	E	R	R	A	L	E	E	K	T	P	K	G	L	S	K	K	E	H	I	I	K	I	V	Y	E	E	L	V	K	L	L	G	E	E	A	K	K	L	E	L	N	P	K	K	Q	N	V	I	L	L	V	G
Template Known Secondary structure															T											T								S	S	S		S	S		S	S																					S								S	S	S
Template Predicted Secondary structure
Template SS confidence
		28	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.
		62	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	P	G	A	G	K	S	T	F	L	E	A	F	G	M	L	L	I	R	E	G	L	K	V	A	V	I	A	V	D	P	S	S	P	V	T	G	G	S	I	L	G	D	K	T	R	M	N	D	L	A	R	A	E	A	A	F	I	R	P	V	P	S	S	G	H	L	G	G	A	S	Q	R	A	R	E	L	M	L	L
Query Conservation
Alig confidence																																.	.	.													.	.	.	.																	.	.
Template Conservation																																.	.	.													.	.	.	.																	.	.
Template Sequence		I	Q	G	S	G	K	T	T	T	A	A	K	L	A	R	Y	I	Q	K	R	G	L	K	P	A	L	I	A	A	D	.	.	.	T	Y	R	P	A	A	Y	E	Q	L	K	Q	.	.	.	.	L	A	E	K	I	H	V	P	I	Y	G	D	E	T	R	T	.	.	K	S	P	V	D	I	V	K	E	G	M	E	K
Template Known Secondary structure			S	S	S	S	T	T																							S	.	.	.				T	T	G	G	G	S	S			.	.	.	.					S	S							S	S	S		.	.		S	S	S	T	T							T
Template Predicted Secondary structure																																.	.	.													.	.	.	.																	.	.
Template SS confidence
		108	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.				.	.	140	.	.	.	.	.	.	.	.	.					150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.			.	.	.	.	170	.	.	.	.	.	.	.	.
		142	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.										.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.				.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																												.	.	.	.	.	.	.	.	.																										.	.	.
Query SS confidence																												.	.	.	.	.	.	.	.	.																										.	.	.
Query Sequence		C	E	A	A	G	Y	D	V	V	I	V	E	T	V	G	V	G	Q	S	E	T	E	V	A	R	M	.	.	.	.	.	.	.	.	.	V	D	C	F	I	S	L	Q	I	A	G	G	G	D	D	L	Q	G	I	K	K	G	L	M	E	.	.	.	V	A	D	L	I	V	I	N	K	D	D	G	D	N	H	T	N
Query Conservation																												.	.	.	.	.	.	.	.	.																										.	.	.
Alig confidence				.	.																							.	.	.	.	.	.	.	.	.																										.	.	.
Template Conservation				.	.
Template Sequence		F	K	.	.	K	A	D	V	L	I	I	D	T	A	G	R	H	K	E	E	K	G	L	L	E	E	M	K	Q	I	K	E	I	T	N	P	D	E	I	I	L	V	I	D	G	T	I	G	Q	Q	A	G	I	Q	A	K	A	F	K	E	A	V	G	E	I	G	S	I	I	V	T	K	L	D	G	S	A	K	G	G
Template Known Secondary structure		T	S	.	.	S		S									S		S	S											T	T	S	S	S			S								G	G	G	G	G	G										T	T	S		S									S	S	S		S	T	T
Template Predicted Secondary structure				.	.
Template SS confidence
		179	180			.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.
		210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.		.	.	.	.	.	.	.	260	.	.	.	.	.	.
Predicted Secondary structure																																													.
Query SS confidence																																													.
Query Sequence		V	A	I	A	R	H	M	Y	E	S	A	L	H	I	L	R	R	K	Y	D	E	W	Q	P	R	V	L	T	C	S	A	L	E	K	R	G	I	D	E	I	W	H	A	.	I	I	D	F	K	T	A	L	T	A	S	G	R	L
Query Conservation																																													.
Alig confidence											.	.	.	.	.	.	.	.	.	.	.	.	.									.	.												.
Template Conservation											.	.	.	.	.	.	.	.	.	.	.	.	.									.	.
Template Sequence		G	A	L	S	A	V	A	E	T	.	.	.	.	.	.	.	.	.	.	.	.	.	K	A	P	I	K	F	I	G	.	.	I	G	E	G	I	D	D	L	E	P	F	D	P	K	K	F	I	S	R	L	L	G	M	G	D	L
Template Known Secondary structure										S	.	.	.	.	.	.	.	.	.	.	.	.	.	S								.	.		S	S	S	S	S	S			B											T		S	S		S
Template Predicted Secondary structure											.	.	.	.	.	.	.	.	.	.	.	.	.									.	.
Template SS confidence
		257	.	.	260	.	.	.	.	.														.	.	.	.	270	.	.	.			.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions