Job Description P27254 Confidence 98.44% Date Thu Jan 5 11:43:35 GMT 2012 Rank 286 Aligned Residues 245 % Identity 13% Template c2ozeA_ PDB info PDB header:dna binding protein Chain: A: PDB Molecule:orf delta'; PDBTitle: the crystal structure of delta protein of psm19035 from2 streptoccocus pyogenes Resolution 1.83 Å

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		34	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.		.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.
Predicted Secondary structure																														.																																																.	.	.	.
Query SS confidence																														.																																																.	.	.	.
Query Sequence		P	R	H	Q	A	L	S	T	Q	L	L	D	A	I	M	P	Y	C	G	N	T	L	R	L	G	V	T	G	.	T	P	G	A	G	K	S	T	F	L	E	A	F	G	M	L	L	I	R	E	G	L	K	V	A	V	I	A	V	D	P	S	S	P	V	T	G	G	S	I	L	G	D	K	T	R	M	.	.	.	.
Query Conservation																														.																																																.	.	.	.
Alig confidence																														.																																																.	.	.	.
Template Conservation
Template Sequence		E	K	E	E	L	K	I	L	E	E	L	R	R	I	L	S	N	K	N	E	A	I	V	I	L	N	N	Y	F	K	G	G	V	G	K	S	K	L	S	T	M	F	A	Y	L	T	D	K	L	N	L	K	V	L	M	I	D	K	D	L	Q	A	T	L	T	K	D	L	A	K	T	F	K	V	E	L	P	R	V	N
Template Known Secondary structure																					S									S	S	S	S	S	S															T	T										T	T								T	T	T	S						S	S
Template Predicted Secondary structure
Template SS confidence
		16	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.
														109	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.										.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.		.	.	.	.	.	160	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.																		.	.	.	.	.	.	.	.	.																														.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.																		.	.	.	.	.	.	.	.	.																														.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	N	D	L	A	R	A	E	A	A	F	I	R	P	V	P	S	S	.	.	.	.	.	.	.	.	.	G	H	L	G	G	A	S	Q	R	A	R	E	L	M	L	L	C	E	A	A	G	Y	D	V	V	I	V	E	T	.	V	G	V	G	Q	S	E	T	E	V	A	R
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.																		.	.	.	.	.	.	.	.	.																														.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.																		.	.	.	.	.	.	.	.	.																														.
Template Conservation
Template Sequence		F	Y	E	G	L	K	N	G	N	L	A	S	S	I	V	H	L	T	D	N	L	D	L	I	P	G	T	F	D	L	M	L	L	P	K	L	T	R	S	W	T	F	E	N	E	S	R	L	L	A	T	L	L	A	P	L	K	S	D	Y	D	L	I	I	I	D	T	V	P	T	P	S	V	Y	T	N	N	A	I	V
Template Known Secondary structure									T			G	G	G				S	S	S	S								G	G	G	G	G					T	T	T	S							T							G	G	G	G	G	G		S								S	S		S
Template Predicted Secondary structure
Template SS confidence
		96	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.
		167	.	.	170	.	.	.	.	.	.	.	.	.	180	.												.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.
Predicted Secondary structure																	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		M	V	D	C	F	I	S	L	Q	I	A	G	G	G	D	.	.	.	.	.	.	.	.	.	.	.	D	L	Q	G	I	K	K	G	L	M	E	V	A	D	L	I	V	I	N	K	D	D	G	D	N	H	T	N	V	A	I	A	R	H	M	Y	E	S	A	L	H	I	L	R	R	K	Y	D	E	W	Q	P	R	V
Query Conservation																	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																	.	.	.	.	.	.	.	.	.	.	.																											.	.	.	.	.
Template Conservation																																																						.	.	.	.	.
Template Sequence		A	S	D	Y	V	M	I	P	L	Q	A	E	E	E	S	T	N	N	I	Q	N	Y	I	S	Y	L	I	D	L	Q	E	Q	F	N	P	G	L	D	M	I	G	F	V	P	Y	L	V	D	T	D	S	A	.	.	.	.	.	T	I	K	S	N	L	E	E	L	Y	K	Q	H	K	E	D	N	L	V	F	Q	N	I
Template Known Secondary structure				S								G	G	G																						T	T											S		T	T			.	.	.	.	.													T	T	T	T			B		S	S
Template Predicted Secondary structure																																																						.	.	.	.	.
Template SS confidence
		176	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.						.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250
		236	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	T	C	S	A	L	E	K	R	G	I	D	E	I	W	H	A	I	I	D	F	K	T	A	L	T	A	S	G	R	L	Q	Q	V	R	Q	Q	Q	S	V	E	W	L	R	K	Q	T	E	E	E	V	L	N	H	L	F	A	N	E
Query Conservation
Alig confidence								.	.	.	.	.	.	.	.	.	.	.
Template Conservation								.	.	.	.	.	.	.	.	.	.	.
Template Sequence		I	K	R	S	N	K	.	.	.	.	.	.	.	.	.	.	.	V	S	T	W	S	K	N	G	I	T	E	H	K	G	Y	D	K	K	V	L	S	M	Y	K	N	V	F	F	E	M	L	E	R	I	I	Q	L	E	N	E	K	E
Template Known Secondary structure								.	.	.	.	.	.	.	.	.	.	.											S	S	S	T	T
Template Predicted Secondary structure								.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		251	.	.	.	.	.												.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions