Job Description P27254 Confidence 99.17% Date Thu Jan 5 11:43:35 GMT 2012 Rank 183 Aligned Residues 161 % Identity 14% Template c2oilA_ PDB info PDB header:protein transport Chain: A: PDB Molecule:ras-related protein rab-25; PDBTitle: crystal structure of human rab25 in complex with gdp Resolution 2.30 Å

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		55	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	R	L	G	V	T	G	T	P	G	A	G	K	S	T	F	L	E	A	F	G	M	L	L	I	R	E	G	L	K	V	A	V	I	A	V	D	P	S	S	P	V	T	G	G	S	I	L	G	D	K	T	R	M	N	D	L	A	R	A	E	A	A	F	I	R	P	V	P	S	S	G	H	L	G	G	A	S	Q	R
Query Conservation
Alig confidence																								.	.	.	.	.	.	.	.	.														.	.	.	.	.	.																														.
Template Conservation																								.	.	.	.	.	.	.	.	.														.	.	.	.	.	.																														.
Template Sequence		F	K	V	V	L	I	G	E	S	G	V	G	K	T	N	L	L	S	R	F	T	R	.	.	.	.	.	.	.	.	.	N	E	F	S	H	D	S	R	T	T	I	G	V	.	.	.	.	.	.	E	F	S	T	R	T	V	M	L	G	T	A	A	V	K	A	Q	I	W	D	T	A	G	L	E	R	Y	R	A	.
Template Known Secondary structure								S	S	T	T	S	S											.	.	.	.	.	.	.	.	.	S				S	S					S	S		.	.	.	.	.	.										T	T											S				T	T		T	.
Template Predicted Secondary structure																								.	.	.	.	.	.	.	.	.														.	.	.	.	.	.																														.
Template SS confidence
		13	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.										.	.	.	.	.	40	.	.	.	.	.	.	.							.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.
		135	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	R	E	L	M	L	L	C	E	A	A	G	Y	D	V	V	I	V	E	T	V	G	V	G	Q	S	E	T	E	V	A	R	M	V	D	C	F	I	S	L	Q	I	A	G	G	G	D	D	L	Q	G	I	K	K	G	L	M	E	V	A	D	L	I	V	I	N	K	D	D	G	D	N	H	T	N	V	A	I	A	R
Query Conservation
Alig confidence		.	.																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation		.	.																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	I	T	S	A	Y	Y	R	G	A	V	G	A	L	L	V	F	D	L	T	K	H	Q	T	Y	A	V	V	E	R	W	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	K	E	L	Y	D	H	A	E	A	T	I	V	V	M	L	V	G	N	K	S	D	L	S	Q	A	R	E	V	P	T	E	E
Template Known Secondary structure		.	.	T						T	T										T	T							T					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.						T	T	S		T	T										G	G	G	G	G	G			S
Template Predicted Secondary structure		.	.																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
				77	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.																.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.
		215	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		H	M	Y	E	S	A	L	H	I	L	R	R	K	Y	D	E	W	Q	P	R	V	L	T	C	S	A	L	E	K	R	G	I	D	E	I	W	H	A	I	I	D	F	K
Query Conservation
Alig confidence									.	.	.	.	.	.	.	.	.
Template Conservation									.	.	.	.	.	.	.	.	.
Template Sequence		A	R	M	F	A	E	N	.	.	.	.	.	.	.	.	.	N	G	L	L	F	L	E	T	S	A	L	D	S	T	N	V	E	L	A	F	E	T	V	L	K	E	I
Template Known Secondary structure									.	.	.	.	.	.	.	.	.	T	T								T	T	T		T	T
Template Predicted Secondary structure									.	.	.	.	.	.	.	.	.
Template SS confidence
		140	.	.	.	.	.	.										.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions