Job Description P27254 Confidence 99.67% Date Thu Jan 5 11:43:35 GMT 2012 Rank 59 Aligned Residues 220 % Identity 15% Template c2j7pA_ PDB info PDB header:signal recognition Chain: A: PDB Molecule:signal recognition particle protein; PDBTitle: gmppnp-stabilized ng domain complex of the srp gtpases ffh2 and ftsy Resolution 1.97 Å

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		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.							.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.
Predicted Secondary structure																																																				.	.	.	.	.	.
Query SS confidence																																																				.	.	.	.	.	.
Query Sequence		I	N	E	A	T	L	A	E	S	I	R	R	L	R	Q	G	E	R	A	T	L	A	Q	A	M	T	L	V	E	S	R	H	P	R	H	Q	A	L	S	T	Q	L	L	D	A	I	M	P	Y	C	.	.	.	.	.	.	G	N	T	L	R	L	G	V	T	G	T	P	G	A	G	K	S	T	F	L	E	A	F	G
Query Conservation																																																				.	.	.	.	.	.
Alig confidence																.	.	.																																		.	.	.	.	.	.
Template Conservation																.	.	.
Template Sequence		V	N	L	E	V	A	R	D	F	V	E	R	V	R	.	.	.	E	E	A	L	G	K	Q	V	L	E	S	L	T	P	A	E	V	I	L	A	T	V	Y	E	A	L	K	E	A	L	G	G	E	A	R	L	P	V	L	K	D	R	N	L	W	F	L	V	G	L	Q	G	S	G	K	T	T	T	A	A	K	L	A
Template Known Secondary structure																.	.	.						T	T	T	T	T		S																		T	T	S	S								S	S								S	T	T	S	S
Template Predicted Secondary structure																.	.	.
Template SS confidence
		43	.	.	.	.	.	.	50	.	.	.	.	.	.				.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.
		76	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		M	L	L	I	R	E	G	L	K	V	A	V	I	A	V	D	P	S	S	P	V	T	G	G	S	I	L	G	D	K	T	R	M	N	D	L	A	R	A	E	A	A	F	I	R	P	V	P	S	S	G	H	L	G	G	A	S	Q	R	A	R	E	L	M	L	L	C	E	A	A	G	Y	D	V	V	I	V	E	T	V
Query Conservation
Alig confidence																						.	.	.	.	.	.	.																										.	.	.
Template Conservation																						.	.	.	.	.	.	.																										.	.	.
Template Sequence		L	Y	Y	K	G	K	G	R	R	P	L	L	V	A	A	D	T	Q	R	P	.	.	.	.	.	.	.	A	A	R	E	Q	L	R	L	L	G	E	K	V	G	V	P	V	L	E	V	M	D	G	E	S	.	.	.	P	E	S	I	R	R	R	V	E	E	K	A	R	L	E	A	R	D	L	I	L	V	D	T	A
Template Known Secondary structure						T	T	T											S	S	T	.	.	.	.	.	.	.	T													T								T	T			.	.	.															T	T
Template Predicted Secondary structure																						.	.	.	.	.	.	.																										.	.	.
Template SS confidence
		120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.								140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.				.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.
		156	.	.	.	160	.	.	.	.										.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.			.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.
Predicted Secondary structure											.	.	.	.	.	.	.	.	.																													.	.
Query SS confidence											.	.	.	.	.	.	.	.	.																													.	.
Query Sequence		G	V	G	Q	S	E	T	E	V	.	.	.	.	.	.	.	.	.	A	R	M	V	D	C	F	I	S	L	Q	I	A	G	G	G	D	D	L	Q	G	I	K	K	G	L	M	E	.	.	V	A	D	L	I	V	I	N	K	D	D	G	D	N	H	T	N	V	A	I	A	R	H	M	Y	E	S	A	L	H	I	L
Query Conservation											.	.	.	.	.	.	.	.	.																													.	.
Alig confidence											.	.	.	.	.	.	.	.	.																													.	.																													.	.	.	.
Template Conservation																																																																														.	.	.	.
Template Sequence		G	R	L	Q	I	D	E	P	L	M	G	E	L	A	R	L	K	E	V	L	G	P	D	E	V	L	L	V	L	D	A	M	T	G	Q	E	A	L	S	V	A	R	A	F	D	E	K	V	G	V	T	G	L	V	L	T	K	L	D	G	D	A	R	G	G	A	A	L	S	A	R	H	V	T	G	K	.	.	.	.
Template Known Secondary structure					T	T																		S								T	T			T	T												T										T	T	S					T												.	.	.	.
Template Predicted Secondary structure																																																																														.	.	.	.
Template SS confidence
		190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.
		225	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	R	K	Y	D	E	W	Q	P	R	V	L	T	C	S	A	L	E	K	R	G	I	D	E	I
Query Conservation
Alig confidence		.	.	.	.	.	.	.	.	.							.	.
Template Conservation		.	.	.	.	.	.	.	.	.							.	.
Template Sequence		.	.	.	.	.	.	.	.	.	P	I	Y	F	A	G	.	.	V	S	E	K	P	E	G	L
Template Known Secondary structure		.	.	.	.	.	.	.	.	.							.	.		S	S	S	T	T
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.							.	.
Template SS confidence
											266	.	.	.	270	.			.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions