Job Description P27254 Confidence 99.60% Date Thu Jan 5 11:43:35 GMT 2012 Rank 82 Aligned Residues 221 % Identity 18% Template c2j289_ PDB info PDB header:ribosome Chain: 9: PDB Molecule:signal recognition particle 54; PDBTitle: model of e. coli srp bound to 70s rncs Resolution 8.0 Å

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		4	.	.	.	.	.	10	.	.	.	.	.	.	.	.							.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.																	.	.	50	.	.	.	.	.	.	.	.	.	60	.
Predicted Secondary structure																	.	.	.	.	.	.																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																	.	.	.	.	.	.																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		E	A	T	L	A	E	S	I	R	R	L	R	Q	G	E	.	.	.	.	.	.	R	A	T	L	A	Q	A	M	T	L	V	E	S	R	H	P	R	H	Q	A	L	S	T	Q	L	L	D	A	I	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	M	P	Y	C	G	N	T	L	R	L	G	V	T	G
Query Conservation																	.	.	.	.	.	.																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																	.	.	.	.	.	.																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		K	D	T	L	R	E	V	R	M	A	L	L	E	A	D	V	A	L	P	V	V	R	E	F	I	N	R	V	K	E	K	A	V	G	H	E	V	N	K	S	L	T	P	G	Q	E	F	V	K	I	V	R	N	E	L	V	A	A	M	G	E	E	N	Q	T	L	N	L	A	A	Q	P	P	A	V	V	L	M	A	G
Template Known Secondary structure														T	S	S																		T	T					S	S	S																		T	T		S						S		S	S	S	S
Template Predicted Secondary structure
Template SS confidence
		28	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.
		62	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.		.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Predicted Secondary structure																						.
Query SS confidence																						.
Query Sequence		T	P	G	A	G	K	S	T	F	L	E	A	F	G	M	L	L	I	R	E	.	G	L	K	V	A	V	I	A	V	D	P	S	S	P	V	T	G	G	S	I	L	G	D	K	T	R	M	N	D	L	A	R	A	E	A	A	F	I	R	P	V	P	S	S	G	H	L	G	G	A	S	Q	R	A	R	E	L	M	L
Query Conservation																						.
Alig confidence																						.											.	.	.																					.	.	.	.	.	.	.
Template Conservation																																	.	.	.																					.	.	.	.	.	.	.
Template Sequence		L	Q	G	A	G	K	T	T	S	V	G	K	L	G	K	F	L	R	E	K	H	K	K	K	V	L	V	V	S	A	D	.	.	.	V	Y	R	P	A	A	I	K	Q	L	E	T	L	A	E	Q	V	G	V	D	.	.	.	.	.	.	.	F	F	P	S	D	V	G	Q	K	P	V	D	I	V	N	A	A	L	K
Template Known Secondary structure		S	S	S	S	S	S	T	T	T										T	S	S	S					B					.	.	.		S	S	S		S											T	T			.	.	.	.	.	.	.					S	S				T	T
Template Predicted Secondary structure																																	.	.	.																					.	.	.	.	.	.	.
Template SS confidence
		108	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.				.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.								.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.
		141	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.										.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.			.	.	.	200	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																													.	.	.	.	.	.	.	.	.																														.	.
Query SS confidence																													.	.	.	.	.	.	.	.	.																														.	.
Query Sequence		L	C	E	A	A	G	Y	D	V	V	I	V	E	T	V	G	V	G	Q	S	E	T	E	V	A	R	M	.	.	.	.	.	.	.	.	.	V	D	C	F	I	S	L	Q	I	A	G	G	G	D	D	L	Q	G	I	K	K	G	L	M	E	V	A	D	L	.	.	I	V	I	N	K	D	D	G	D	N	H	T	N
Query Conservation																													.	.	.	.	.	.	.	.	.																														.	.
Alig confidence																													.	.	.	.	.	.	.	.	.																														.	.
Template Conservation
Template Sequence		E	A	K	L	K	F	Y	D	V	L	L	V	D	T	A	G	R	L	H	V	D	E	A	M	M	D	E	I	K	Q	V	H	A	S	I	N	P	V	E	T	L	F	V	V	D	A	M	T	G	Q	D	A	A	N	T	A	K	A	F	N	E	A	L	P	L	T	G	V	V	L	T	K	V	D	G	D	A	R	G	G
Template Known Secondary structure						T	T		S											S	S																		S								T	T	T	G	G	G	G									T	T		S	S								S	S	S		S			T
Template Predicted Secondary structure
Template SS confidence
		178	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.
		210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	A	I	A	R	H	M	Y	E	S	A	L	H	I	L	R	R	K	Y	D	E	W	Q	P	R	V	L	T	C	S	A	L	E	K	R	G	I	D	E	I
Query Conservation
Alig confidence											.	.	.	.	.	.	.	.	.	.	.	.	.									.	.
Template Conservation											.	.	.	.	.	.	.	.	.	.	.	.	.									.	.
Template Sequence		A	A	L	S	I	R	H	I	T	.	.	.	.	.	.	.	.	.	.	.	.	.	G	K	P	I	K	F	L	G	.	.	V	G	E	K	T	E	A	L
Template Known Secondary structure									T	T	.	.	.	.	.	.	.	.	.	.	.	.	.	T			B					.	.		S	S	S	T	T
Template Predicted Secondary structure											.	.	.	.	.	.	.	.	.	.	.	.	.									.	.
Template SS confidence
		258	.	260	.	.	.	.	.	.														.	.	.	270	.	.	.	.			.	.	.	.	.	280	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions