Job Description P27254 Confidence 99.66% Date Thu Jan 5 11:43:35 GMT 2012 Rank 63 Aligned Residues 154 % Identity 16% Template c2elfA_ PDB info PDB header:translation Chain: A: PDB Molecule:protein translation elongation factor 1a; PDBTitle: crystal structure of the selb-like elongation factor ef-pyl2 from methanosarcina mazei Resolution 1.70 Å

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		55	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	R	L	G	V	T	G	T	P	G	A	G	K	S	T	F	L	E	A	F	G	M	L	L	I	R	E	G	L	K	V	A	V	I	A	V	D	P	S	S	P	V	T	G	G	S	I	L	G	D	K	T	R	M	N	D	L	A	R	A	E	A	A	F	I	R	P	V	P	S	S	G	H	L	G	G	A	S	Q	R
Query Conservation
Alig confidence																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.										.	.	.	.	.	.	.	.	.																					.	.	.	.
Template Conservation																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.										.	.	.	.	.	.	.	.	.																					.	.	.	.
Template Sequence		A	N	V	A	I	I	G	T	E	K	S	G	R	T	S	L	A	A	N	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	K	K	G	T	S	S	D	I	.	.	.	.	.	.	.	.	.	T	X	Y	N	N	D	K	E	G	R	N	X	V	F	V	D	A	H	S	Y	.	.	.	.	P	K	T
Template Known Secondary structure									S	T	T	S	S							T	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S						S	S	S	.	.	.	.	.	.	.	.	.							S	S	S	S								T	T	T	.	.	.	.	T	T
Template Predicted Secondary structure																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.										.	.	.	.	.	.	.	.	.																					.	.	.	.
Template SS confidence
		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.																.	.	.	.	.	.	.	.	30										.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50					.	.	.
		135	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.		.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.
Predicted Secondary structure																																																														.
Query SS confidence																																																														.
Query Sequence		A	R	E	L	M	L	L	C	E	A	A	G	Y	D	V	V	I	V	E	T	V	G	V	G	Q	S	E	T	E	V	A	R	M	V	D	C	F	I	S	L	Q	I	A	G	G	G	D	D	L	Q	G	I	K	K	G	L	M	E	V	A	.	D	L	I	V	I	N	K	D	D	G	D	N	H	T	N	V	A	I	A
Query Conservation																																																														.
Alig confidence																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.									.
Template Conservation																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		L	K	S	L	I	T	A	L	N	I	S	D	I	A	V	L	C	I	P	P	Q	G	L	D	A	H	T	G	E	C	I	I	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	L	D	L	L	G	F	K	H	G	I	I	A	L	T	R	S	D	S	T	H	X	H	A	I	D	E	L
Template Known Secondary structure											T		S								T	T												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.					T	T											G	G	G	S
Template Predicted Secondary structure																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		54	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.																					.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.
		214	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.						.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260
Predicted Secondary structure																																.	.	.	.	.
Query SS confidence																																.	.	.	.	.
Query Sequence		R	H	M	Y	E	S	A	L	H	I	L	R	R	K	Y	D	E	W	Q	P	R	V	L	T	C	S	A	L	E	K	.	.	.	.	.	R	G	I	D	E	I	W	H	A	I	I	D	F	K	T	A	L
Query Conservation																																.	.	.	.	.
Alig confidence											.	.	.	.																		.	.	.	.	.
Template Conservation											.	.	.	.
Template Sequence		K	A	K	L	K	V	I	T	S	.	.	.	.	G	T	V	L	Q	D	W	E	C	I	S	L	N	T	N	K	S	A	K	N	P	F	E	G	V	D	E	L	K	A	R	I	N	E	V	A	E	K	I
Template Known Secondary structure									T	T	.	.	.	.	T	S	T	T	T	T										T	T	S	S	S	T	T	T	T
Template Predicted Secondary structure											.	.	.	.
Template SS confidence
		114	.	.	.	.	.	120	.	.					.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions