Job Description P27254 Confidence 99.97% Date Thu Jan 5 11:43:35 GMT 2012 Rank 6 Aligned Residues 278 % Identity 21% Template c1xzqA_ PDB info PDB header:hydrolase Chain: A: PDB Molecule:probable trna modification gtpase trme; PDBTitle: structure of the gtp-binding protein trme from thermotoga2 maritima complexed with 5-formyl-thf Resolution 2.90 Å

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		4	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.																		.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.
Predicted Secondary structure																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		E	A	T	L	A	E	S	I	R	R	L	R	Q	G	E	R	A	T	L	A	Q	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	M	T	L	V	E	S	R	H	P	R	H	Q	A	L	S	T	Q	L	L	D	A	I	M	P	Y	C	G	N	T	L	R	L	G	V	T	G	T	P	G	A	G
Query Conservation																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																												.	.
Template Conservation																																																																				.	.
Template Sequence		K	G	G	L	R	D	F	V	D	S	L	R	R	E	L	I	E	V	L	A	E	I	R	V	E	L	D	Y	P	D	E	I	E	T	N	T	G	E	V	V	T	R	L	E	R	I	K	E	K	L	T	E	E	L	K	K	A	D	A	G	I	L	L	N	R	G	.	.	L	R	M	V	I	V	G	K	P	N	V	G
Template Known Secondary structure		T	T																											S	S	S																									S											.	.									T	T	G	G
Template Predicted Secondary structure																																																																				.	.
Template SS confidence
		146	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.			.	.	.	.	.	.	.	.	220	.	.	.
		67	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	S	T	F	L	E	A	F	G	M	L	L	I	R	E	G	L	K	V	A	V	I	A	V	D	P	S	S	P	V	T	G	G	S	I	L	G	D	K	T	R	M	N	D	L	A	R	A	E	A	A	F	I	R	P	V	P	S	S	G	H	L	G	G	A	S	Q	R	A	R	E	L	M	L	L	C	E	A	A	G
Query Conservation
Alig confidence											.	.	.	.	.	.																		.	.	.	.	.	.	.	.	.																												.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation											.	.	.	.	.	.																		.	.	.	.	.	.	.	.	.																												.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		K	S	T	L	L	N	R	L	L	.	.	.	.	.	.	N	E	D	R	A	I	V	T	D	I	P	G	T	T	R	D	V	.	.	.	.	.	.	.	.	.	I	S	E	E	I	V	I	R	G	I	L	F	R	I	V	D	T	A	G	V	R	S	E	T	N	D	L	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure		G	S								.	.	.	.	.	.			T	B										S			S	.	.	.	.	.	.	.	.	.								T	T								S	S				S	S			S	S	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure											.	.	.	.	.	.																		.	.	.	.	.	.	.	.	.																												.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		224	.	.	.	.	.	230	.	.							.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.										250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.
		147	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180			.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.
Predicted Secondary structure																																				.	.
Query SS confidence																																				.	.
Query Sequence		Y	D	V	V	I	V	E	T	V	G	V	G	Q	S	E	T	E	V	A	R	M	V	D	C	F	I	S	L	Q	I	A	G	G	G	.	.	D	D	L	Q	G	I	K	K	G	L	M	E	V	A	D	L	I	V	I	N	K	D	D	G	D	N	H	T	N	V	A	I	A	R	H	M	Y	E	S	A	L	H	I	L
Query Conservation																																				.	.
Alig confidence		.	.	.	.	.										.																				.	.																																							.	.	.	.	.	.
Template Conservation		.	.	.	.	.										.																																																												.	.	.	.	.	.
Template Sequence		.	.	.	.	.	V	E	R	L	G	I	E	R	T	.	L	Q	E	I	E	K	A	D	I	V	L	F	V	L	D	A	S	S	P	L	D	E	E	D	R	K	I	L	E	R	I	K	N	K	R	Y	L	V	V	I	N	K	V	D	V	V	E	K	I	N	E	E	E	I	K	N	K	L	G	.	.	.	.	.	.
Template Known Secondary structure		.	.	.	.	.										.								S								S	S	S													G	G	G	S	S									S	S				S									T	S	.	.	.	.	.	.
Template Predicted Secondary structure		.	.	.	.	.										.																																																												.	.	.	.	.	.
Template SS confidence
							277	.	.	280	.	.	.	.	.		.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.
		225	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.				.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.
Predicted Secondary structure																																				.	.	.
Query SS confidence																																				.	.	.
Query Sequence		R	R	K	Y	D	E	W	Q	P	R	V	L	T	C	S	A	L	E	K	R	G	I	D	E	I	W	H	A	I	I	D	F	K	T	.	.	.	A	L	T	A	S	G	R	L	Q	Q	V	R	Q	Q	Q	S	V	E	W	L	R	K	Q	T	E	E	E	V	L	N	H	L	F	A	N	E	D	F	D	R	Y	Y	R
Query Conservation																																				.	.	.
Alig confidence		.	.	.	.	.	.																													.	.	.																									.
Template Conservation		.	.	.	.	.	.																																																								.
Template Sequence		.	.	.	.	.	.	T	D	R	H	M	V	K	I	S	A	L	K	G	E	G	L	E	K	L	E	E	S	I	Y	R	E	T	Q	E	I	F	E	R	G	S	D	S	L	I	T	N	L	R	Q	K	Q	L	L	E	N	V	K	G	H	L	.	E	D	A	I	K	S	L	K	E	G	M	P	V	D	M	A	S	I
Template Known Secondary structure		.	.	.	.	.	.		S	T	T						T	T	T	T														T								T	T		S			S															.									T	T
Template Predicted Secondary structure		.	.	.	.	.	.																																																								.
Template SS confidence
								345	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.		400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.
		302	.	.	.	.	.	.	.		310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.
Predicted Secondary structure										.
Query SS confidence										.
Query Sequence		Q	T	L	L	A	V	K	N	.	N	T	L	S	P	R	T	G	L	R	Q	L	S	E	F	I	Q	T	Q	Y
Query Conservation										.
Alig confidence										.
Template Conservation
Template Sequence		D	L	E	R	A	L	N	L	L	D	E	V	T	G	R	S	F	R	E	D	L	L	D	T	I	F	S	N	F
Template Known Secondary structure															T	S	S												T	S
Template Predicted Secondary structure
Template SS confidence
		418	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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