Job Description P27254 Confidence 99.64% Date Thu Jan 5 11:43:35 GMT 2012 Rank 68 Aligned Residues 288 % Identity 16% Template c1qzwC_ PDB info PDB header:signaling protein/rna Chain: C: PDB Molecule:signal recognition 54 kda protein; PDBTitle: crystal structure of the complete core of archaeal srp and2 implications for inter-domain communication Resolution 4.10 Å

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		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.											.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.																	.	.	.	.
Predicted Secondary structure																			.	.	.	.	.	.	.	.	.	.																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																			.	.	.	.	.	.	.	.	.	.																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		I	N	E	A	T	L	A	E	S	I	R	R	L	R	Q	G	E	.	.	.	.	.	.	.	.	.	.	R	A	T	L	A	Q	A	M	T	L	V	E	S	R	H	P	R	H	Q	A	L	S	T	Q	L	L	D	A	I	M	P	Y	C	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	N	T	L
Query Conservation																			.	.	.	.	.	.	.	.	.	.																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																			.	.	.	.	.	.	.	.	.	.																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		P	Y	E	K	A	V	D	E	F	I	K	D	L	Q	K	S	L	I	S	S	D	V	N	V	K	L	V	F	S	L	T	A	K	I	K	E	R	L	N	K	E	K	P	P	S	V	L	E	R	K	E	W	F	I	S	I	V	Y	D	E	L	S	K	L	F	G	G	D	K	E	P	N	V	N	P	T	K	L	P	F
Template Known Secondary structure			S	T																T	S	S																		T	T					S	S	S																		T	T		S						S		S	S	S	S
Template Predicted Secondary structure
Template SS confidence
		18	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.
		56	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	L	G	V	T	G	T	P	G	A	G	K	S	T	F	L	E	A	F	G	M	L	L	I	R	E	G	L	K	V	A	V	I	A	V	D	P	S	S	P	V	T	G	G	S	I	L	G	D	K	T	R	M	N	D	L	A	R	A	E	A	A	F	I	R	P	V	P	S	S	G	H	L	G	G	A	S	Q	R	A
Query Conservation
Alig confidence																																						.	.	.													.	.	.	.																.	.	.
Template Conservation																																						.	.	.													.	.	.	.																.	.	.
Template Sequence		I	I	M	L	V	G	V	Q	G	S	G	K	T	T	T	A	G	K	L	A	Y	F	Y	K	K	R	G	Y	K	V	G	L	V	A	A	D	.	.	.	V	Y	R	P	A	A	Y	D	Q	L	L	Q	.	.	.	.	L	G	N	Q	I	G	V	Q	V	Y	G	E	P	N	N	.	.	.	Q	N	P	I	E	I	A
Template Known Secondary structure								S	S	S	S	S	S	T	T	T										T	T	S					B					.	.	.		S	S	S		S							.	.	.	.					T	T							S	S		.	.	.			T	T
Template Predicted Secondary structure																																						.	.	.													.	.	.	.																.	.	.
Template SS confidence
		98	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.				.	.	.	.	.	.	140	.	.	.	.	.					.	.	.	.	150	.	.	.	.	.	.	.	.	.	160				.	.	.	.	.	.	.
		136	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.												.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.			.	.	.	200	.	.
Predicted Secondary structure																															.	.	.	.	.	.	.	.	.	.	.																																	.	.
Query SS confidence																															.	.	.	.	.	.	.	.	.	.	.																																	.	.
Query Sequence		R	E	L	M	L	L	C	E	A	A	G	Y	D	V	V	I	V	E	T	V	G	V	G	Q	S	E	T	E	V	.	.	.	.	.	.	.	.	.	.	.	A	R	M	V	D	C	F	I	S	L	Q	I	A	G	G	G	D	D	L	Q	G	I	K	K	G	L	M	E	V	A	D	L	.	.	I	V	I	N	K	D
Query Conservation																															.	.	.	.	.	.	.	.	.	.	.																																	.	.
Alig confidence																															.	.	.	.	.	.	.	.	.	.	.																																	.	.
Template Conservation
Template Sequence		K	K	G	V	D	I	F	V	K	N	K	M	D	I	I	I	V	D	T	A	G	R	H	G	Y	G	E	E	T	K	L	L	E	E	M	K	E	M	Y	D	V	L	K	P	D	D	V	I	L	V	I	D	A	S	I	G	Q	K	A	Y	D	L	A	S	R	F	H	Q	A	S	P	I	G	S	V	I	I	T	K	M
Template Known Secondary structure											T	T		S									S			S	S	T																		S								T	T	T	G	G	G	G									T	T		S	S								S
Template Predicted Secondary structure
Template SS confidence
		168	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.
		203	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.		.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.
Predicted Secondary structure																																																				.
Query SS confidence																																																				.
Query Sequence		D	G	D	N	H	T	N	V	A	I	A	R	H	M	Y	E	S	A	L	H	I	L	R	R	K	Y	D	E	W	Q	P	R	V	L	T	C	S	A	L	E	K	R	G	I	D	E	I	W	H	A	.	I	I	D	F	K	T	A	L	T	A	S	G	R	L	Q	Q	V	R	Q	Q	Q	S	V	E	W	L	R	K	Q
Query Conservation																																																				.
Alig confidence																				.	.	.	.	.	.	.	.	.	.	.	.	.							.	.												.
Template Conservation																				.	.	.	.	.	.	.	.	.	.	.	.	.							.	.
Template Sequence		D	G	T	A	K	G	G	G	A	L	S	A	V	V	A	T	G	A	.	.	.	.	.	.	.	.	.	.	.	.	.	T	I	K	F	I	G	.	.	T	G	E	K	I	D	E	L	E	T	F	N	A	K	R	F	V	S	R	I	L	G	M	G	D	I	E	S	I	L	E	K	V	K	G	L	E	E	Y	D	K
Template Known Secondary structure		S	S		S			T								T	T	T		.	.	.	.	.	.	.	.	.	.	.	.	.		B					.	.		S	S	S	T	T							T							T	T					T											T	T	T	T	T
Template Predicted Secondary structure																				.	.	.	.	.	.	.	.	.	.	.	.	.							.	.
Template SS confidence
		248	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.														.	.	.	.	270	.			.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.
		282	.	.	.	.	.	.	.	290			.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.
Predicted Secondary structure											.	.
Query SS confidence											.	.
Query Sequence		T	E	E	E	V	L	N	H	L	.	.	F	A	N	E	D	F	D	R	Y	Y	R	Q	T	L	L	A	V	K	N	N	T	L	S	P
Query Conservation											.	.
Alig confidence											.	.
Template Conservation
Template Sequence		I	Q	K	K	M	E	D	V	M	E	G	K	G	K	L	T	L	R	D	V	Y	A	Q	I	I	A	L	R	K	M	G	P	L	S	K
Template Known Secondary structure		T	S	S	S				S	S	S	S					S	T	T												S	S		S	T
Template Predicted Secondary structure
Template SS confidence
		313	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions