Job Description P27254 Confidence 99.30% Date Thu Jan 5 11:43:35 GMT 2012 Rank 156 Aligned Residues 155 % Identity 19% Template c1m2oD_ PDB info PDB header:protein transport/signaling protein Chain: D: PDB Molecule:gtp-binding protein sar1; PDBTitle: crystal structure of the sec23-sar1 complex Resolution 2.50 Å

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		56	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	L	G	V	T	G	T	P	G	A	G	K	S	T	F	L	E	A	F	G	M	L	L	I	R	E	G	L	K	V	A	V	I	A	V	D	P	S	S	P	V	T	G	G	S	I	L	G	D	K	T	R	M	N	D	L	A	R	A	E	A	A	F	I	R	P	V	P	S	S	G	H	L	G	G	A	S	Q	R	A
Query Conservation
Alig confidence																						.	.	.	.	.	.															.	.	.	.	.	.	.	.	.	.	.	.	.																										.	.
Template Conservation																						.	.	.	.	.	.															.	.	.	.	.	.	.	.	.	.	.	.	.																										.	.
Template Sequence		K	L	L	F	L	G	L	D	N	A	G	K	T	T	L	L	H	M	L	K	.	.	.	.	.	.	N	D	R	L	A	T	L	Q	P	T	W	H	P	T	.	.	.	.	.	.	.	.	.	.	.	.	.	S	E	E	L	A	I	G	N	I	K	F	T	T	F	D	L	G	G	H	I	Q	A	R	R	L	.	.
Template Known Secondary structure								S	T	T	S	S										.	.	.	.	.	.	T	S										S			.	.	.	.	.	.	.	.	.	.	.	.	.							S	S	S										S	S	G	G	G	G	T	.	.
Template Predicted Secondary structure																						.	.	.	.	.	.															.	.	.	.	.	.	.	.	.	.	.	.	.																										.	.
Template SS confidence
		25	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.							.	.	.	.	.	50	.	.	.	.	.	.	.	.														.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.
		136	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	E	L	M	L	L	C	E	A	A	G	Y	D	V	V	I	V	E	T	V	G	V	G	Q	S	E	T	E	V	A	R	M	V	D	C	F	I	S	L	Q	I	A	G	G	G	D	D	L	Q	G	I	K	K	G	L	M	E	V	A	D	L	I	V	I	N	K	D	D	G	D	N	H	T	N	V	A	I	A	R	H
Query Conservation
Alig confidence		.	.																														.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation		.	.																														.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	W	K	D	Y	F	P	E	V	N	G	I	V	F	L	V	D	A	A	D	P	E	R	F	D	E	A	R	V	E	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	D	A	L	F	N	I	A	E	L	K	D	V	P	F	V	I	L	G	N	K	I	D	A	P	N	A	V	S	E	A	E	L	R	S
Template Known Secondary structure		.	.						T	T										T	T		G	G	G								.	.	.	.	.	.	.	.	.	.	.	.	.	.						T		G	G	G	T	T			B			B				T	T	S	T	T
Template Predicted Secondary structure		.	.																														.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
				84	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.															.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.
		216	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		M	Y	E	S	A	L	H	I	L	R	R	K	Y	D	E	W	Q	P	R	V	L	T	C	S	A	L	E	K	R	G	I	D	E	I	W	H	A	I
Query Conservation
Alig confidence				.	.	.	.	.	.
Template Conservation				.	.	.	.	.	.
Template Sequence		A	L	.	.	.	.	.	.	G	L	L	N	T	T	G	R	P	V	E	V	F	M	C	S	V	V	M	R	N	G	Y	L	E	A	F	Q	W	L
Template Known Secondary structure			T	.	.	.	.	.	.	T		S	S						B			B			B	T	T	T	T	B	S
Template Predicted Secondary structure				.	.	.	.	.	.
Template SS confidence
		148	.							150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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