Job Description P27254 Confidence 99.25% Date Thu Jan 5 11:43:35 GMT 2012 Rank 168 Aligned Residues 217 % Identity 15% Template c1j8yF_ PDB info PDB header:signaling protein Chain: F: PDB Molecule:signal recognition 54 kda protein; PDBTitle: signal recognition particle conserved gtpase domain from a.2 ambivalens t112a mutant Resolution 2.00 Å

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		4	.	.	.	.	.	10	.	.	.	.	.	.	.	.							.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.									.	.	.	40	.	.	.	.	.	.	.	.	.	50	.									.	.	.	.	.	.	.	.	60	.
Predicted Secondary structure																	.	.	.	.	.	.																			.	.	.	.	.	.	.	.																.	.	.	.	.	.	.	.
Query SS confidence																	.	.	.	.	.	.																			.	.	.	.	.	.	.	.																.	.	.	.	.	.	.	.
Query Sequence		E	A	T	L	A	E	S	I	R	R	L	R	Q	G	E	.	.	.	.	.	.	R	A	T	L	A	Q	A	M	T	L	V	E	S	R	H	P	R	H	.	.	.	.	.	.	.	.	Q	A	L	S	T	Q	L	L	D	A	I	M	P	Y	C	.	.	.	.	.	.	.	.	G	N	T	L	R	L	G	V	T	G
Query Conservation																	.	.	.	.	.	.																			.	.	.	.	.	.	.	.																.	.	.	.	.	.	.	.
Alig confidence																	.	.	.	.	.	.																			.	.	.	.	.	.	.	.																.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		E	D	F	I	K	E	L	Q	K	S	L	I	S	A	D	V	N	V	K	L	V	F	S	L	T	N	K	I	K	E	R	L	K	N	E	K	P	P	T	Y	I	E	R	R	E	W	F	I	K	I	V	Y	D	E	L	S	N	L	F	G	G	D	K	E	P	K	V	I	P	D	K	I	P	Y	V	I	M	L	V	G
Template Known Secondary structure															T	T																								T	T																			T	T		S						S		S	S	S	S
Template Predicted Secondary structure
Template SS confidence
		26	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.
		62	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	P	G	A	G	K	S	T	F	L	E	A	F	G	M	L	L	I	R	E	G	L	K	V	A	V	I	A	V	D	P	S	S	P	V	T	G	G	S	I	L	G	D	K	T	R	M	N	D	L	A	R	A	E	A	A	F	I	R	P	V	P	S	S	G	H	L	G	G	A	S	Q	R	A	R	E	L	M	L	L
Query Conservation
Alig confidence					.	.	.	.																								.	.	.																		.	.	.	.											.	.	.
Template Conservation					.	.	.	.																								.	.	.																		.	.	.	.											.	.	.
Template Sequence		V	Q	G	.	.	.	.	T	T	A	G	K	L	A	Y	F	Y	K	K	K	G	F	K	V	G	L	V	G	A	D	.	.	.	V	Y	R	P	A	A	L	E	Q	L	Q	Q	L	G	Q	Q	I	.	.	.	.	G	V	P	V	Y	G	E	P	G	E	.	.	.	K	D	V	V	G	I	A	K	R	G	V	E	K
Template Known Secondary structure		S			.	.	.	.													T	T										.	.	.		S	S															.	.	.	.	T							T	T		.	.	.
Template Predicted Secondary structure					.	.	.	.																								.	.	.																		.	.	.	.											.	.	.
Template SS confidence
		106	.	.					.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.				.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.					.	150	.	.	.	.	.	.	.	.				.	160	.	.	.	.	.	.	.	.	.	170	.
		142	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.												160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.			.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.
Predicted Secondary structure																				.	.	.	.	.	.	.	.	.	.	.																																		.	.
Query SS confidence																				.	.	.	.	.	.	.	.	.	.	.																																		.	.
Query Sequence		C	E	A	A	G	Y	D	V	V	I	V	E	T	V	G	V	G	Q	.	.	.	.	.	.	.	.	.	.	.	S	E	T	E	V	A	R	M	V	D	C	F	I	S	L	Q	I	A	G	G	G	D	D	L	Q	G	I	K	K	G	L	M	E	.	.	V	A	D	L	I	V	I	N	K	D	D	G	D	N	H	T
Query Conservation																				.	.	.	.	.	.	.	.	.	.	.																																		.	.
Alig confidence																				.	.	.	.	.	.	.	.	.	.	.																																		.	.
Template Conservation
Template Sequence		F	L	S	E	K	M	E	I	I	I	V	D	T	A	G	R	H	G	Y	G	E	E	A	A	L	L	E	E	M	K	N	I	Y	E	A	I	K	P	D	E	V	T	L	V	I	D	A	S	I	G	Q	K	A	Y	D	L	A	S	K	F	N	Q	A	S	K	I	G	T	I	I	I	T	K	M	D	G	T	A	K	G
Template Known Secondary structure					T	T		S									S			T	T																			S								G	G	G	G	G	G													T	T								T	T	S		S
Template Predicted Secondary structure
Template SS confidence
		176	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.
		209	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		N	V	A	I	A	R	H	M	Y	E	S	A	L	H	I	L	R	R	K	Y	D	E	W	Q	P	R	V	L	T	C	S	A	L	E	K	R	G	I	D	E	I
Query Conservation
Alig confidence										.	.	.	.	.	.	.	.	.	.	.	.	.											.	.
Template Conservation										.	.	.	.	.	.	.	.	.	.	.	.	.											.	.
Template Sequence		G	G	A	L	S	A	V	A	.	.	.	.	.	.	.	.	.	.	.	.	.	A	T	G	A	T	I	K	F	I	G	.	.	T	G	E	K	I	D	E	L
Template Known Secondary structure										.	.	.	.	.	.	.	.	.	.	.	.	.	T	T	T								.	.		S	S	S	T	T
Template Predicted Secondary structure										.	.	.	.	.	.	.	.	.	.	.	.	.											.	.
Template SS confidence
		256	.	.	.	260	.	.	.														.	.	.	.	.	.	270	.	.	.			.	.	.	.	.	.	280	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions