Phyre 2 alignment of P0AC88 with d1rkxa

Job Description P0AC88
Confidence 100.00% Date Thu Jan 5 11:17:36 GMT 2012

Rank 21 Aligned Residues 312

% Identity 25% Template d1rkxa_

SCOP info NAD(P)-binding Rossmann-fold domains NAD(P)-binding Rossmann-fold domains Tyrosine-dependent oxidoreductases

Resolution 1.80

	Insertion relative to template
	Deletion relative to template
	Catalytic residue from the CSA

Detailed help on interpreting your alignment

	2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
Predicted Secondary structure
Query SS confidence
Query Sequence	S	K	V	A	L	I	T	G	V	T	G	Q	D	G	S	Y	L	A	E	F	L	L	E	K	G	Y	E	V	H	G	I	K	R	R	A	S	S	F	N	T	E	R	V	D	H	I	Y	Q	D	P	H	T	C	N	P	K	F	H	L	H	Y	G	D	L	S	D	T	S	N	L	T	R	I	L	R	E	V	Q	P	D
Query Conservation
Alig confidence																																									.	.	.	.	.	.
Template Conservation																																									.	.	.	.	.	.
Template Sequence	G	K	R	V	F	V	T	G	H	T	G	F	K	G	G	W	L	S	L	W	L	Q	T	M	G	A	T	V	K	G	Y	S	L	T	A	P	T	V	P	S	.	.	.	.	.	.	L	F	E	T	A	R	V	A	D	G	M	Q	S	E	I	G	D	I	R	D	Q	N	K	L	L	E	S	I	R	E	F	Q	P	E
Template Known Secondary structure	T							T	T	T	S													T	T								S	S		S	S	S	S		.	.	.	.	.	.					T	T	T	T	T	T	S							T	T															S
Template Predicted Secondary structure																																									.	.	.	.	.	.
Template SS confidence
	9	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.							.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.

	82	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.
Predicted Secondary structure
Query SS confidence
Query Sequence	E	V	Y	N	L	G	A	M	S	H	V	A	V	S	F	E	S	P	E	Y	T	A	D	V	D	A	M	G	T	L	R	L	L	E	A	I	R	F	L	G	L	E	K	K	T	R	F	Y	Q	A	S	T	S	E	L	Y	G	L	V	Q	E	I	P	Q	K	E	T	T	P	F	Y	P	R	S	P	Y	A	V	A	K
Query Conservation
Alig confidence																																									.
Template Conservation																																									.
Template Sequence	I	V	F	H	M	A	A	Q	P	L	V	R	L	S	Y	S	E	P	V	E	T	Y	S	T	N	V	M	G	T	V	Y	L	L	E	A	I	R	H	V	G	.	G	V	K	A	V	V	N	I	T	S	D	K	C	Y	D	N	K	E	W	I	W	G	Y	R	E	N	E	A	M	G	G	Y	D	P	Y	S	N	S	K
Template Known Secondary structure							S																			T															.											G	G	G	B					S	S	S		B		T	T	S		B			S	S
Template Predicted Secondary structure																																									.
Template SS confidence
	83	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.		.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.

	162	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.										180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.
Predicted Secondary structure																			.	.	.	.	.	.	.	.	.
Query SS confidence																			.	.	.	.	.	.	.	.	.
Query Sequence	L	Y	A	Y	W	I	T	V	N	Y	R	E	S	Y	G	M	Y	A	.	.	.	.	.	.	.	.	.	C	N	G	I	L	F	N	H	E	S	P	R	R	G	E	T	F	V	T	R	K	I	T	R	A	I	A	N	I	A	Q	G	L	E	S	C	L	Y	L	G	N	M	D	S	L	R	D	W	G	H	A	K	D
Query Conservation																			.	.	.	.	.	.	.	.	.
Alig confidence																			.	.	.	.	.	.	.	.	.																			.	.	.	.
Template Conservation																																														.	.	.	.
Template Sequence	G	C	A	E	L	V	T	S	S	Y	R	N	S	F	F	N	P	A	N	Y	G	Q	H	G	T	A	V	A	T	V	R	A	G	N	V	I	G	G	G	D	W	A	L	D	R	.	.	.	.	I	V	P	D	I	L	R	A	F	E	Q	S	Q	P	V	I	I	R	N	P	H	A	I	R	P	W	Q	H	V	L	E
Template Known Secondary structure															S		G	G	G																			T	T				S	S		.	.	.	.											T	T						S		T	T								T
Template Predicted Secondary structure																																														.	.	.	.
Template SS confidence
	162	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.					.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.

	233	.	.	.	.	.	.	240	.	.	.	.	.	.	.									.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.
Predicted Secondary structure																.	.	.	.	.	.	.	.
Query SS confidence																.	.	.	.	.	.	.	.
Query Sequence	Y	V	K	M	Q	W	M	M	L	Q	Q	E	Q	P	E	.	.	.	.	.	.	.	.	D	F	V	I	A	T	G	V	Q	Y	S	V	R	Q	F	V	E	M	A	A	A	Q	L	G	I	K	L	R	F	E	G	T	G	V	E	E	K	G	I	V	V	S	V	T	G	H	D	A	P	G	V	K	P	G	D	V	I
Query Conservation																.	.	.	.	.	.	.	.
Alig confidence																.	.	.	.	.	.	.	.																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence	P	L	S	G	Y	L	L	L	A	Q	K	L	Y	T	D	G	A	E	Y	A	E	G	W	N	F	G	P	N	D	A	D	A	T	P	V	K	N	I	V	E	Q	M	V	K	Y	W	G	E	G	A	S	W	Q	L	E	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure															T		G	G	G		S								G	G	G																	T	T								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
	238	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.

	305	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.
Predicted Secondary structure
Query SS confidence
Query Sequence	I	A	V	D	P	R	Y	F	R	P	A	E	V	E	T	L	L	G	D	P	T	K	A	H	E	K	L	G	W	K	P	E	I	T	L	R	E	M	V	S	E	M	V	A	N	D	L	E	A	A	K	K	H	S	L	L	K
Query Conservation
Alig confidence	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence	.	.	.	.	.	.	.	.	.	.	.	.	.	H	Y	L	K	L	D	C	S	K	A	K	M	Q	L	G	W	H	P	R	W	N	L	N	T	T	L	E	Y	I	V	G	W	H	K	N	W	L	S	G	T	D	M	H	E
Template Known Secondary structure	.	.	.	.	.	.	.	.	.	.	.	.	.					B																																	T	T
Template Predicted Secondary structure	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
														301	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server

Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]

© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys
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