Phyre 2 alignment of P0AC88 with d1gy8a

Job Description P0AC88
Confidence 100.00% Date Thu Jan 5 11:17:36 GMT 2012

Rank 26 Aligned Residues 324

% Identity 20% Template d1gy8a_

SCOP info NAD(P)-binding Rossmann-fold domains NAD(P)-binding Rossmann-fold domains Tyrosine-dependent oxidoreductases

Resolution 2.0

	Insertion relative to template
	Deletion relative to template
	Catalytic residue from the CSA

Detailed help on interpreting your alignment

	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.		.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.													.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.
Predicted Secondary structure																								.																				.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																								.																				.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence	M	S	K	V	A	L	I	T	G	V	T	G	Q	D	G	S	Y	L	A	E	F	L	L	.	E	K	G	Y	E	V	H	G	I	K	R	R	A	S	S	F	N	T	E	.	.	.	.	.	.	.	.	.	.	.	.	R	V	D	H	I	Y	Q	D	P	H	T	C	N	P	K	F	H	L	H	Y	G	D	L	S	D
Query Conservation																								.																				.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence			.	.																				.																				.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation			.	.
Template Sequence	M	R	.	.	V	L	V	C	G	G	A	G	Y	I	G	S	H	F	V	R	A	L	L	R	D	T	N	H	S	V	V	I	V	D	S	L	V	G	T	H	G	K	S	D	H	V	E	T	R	E	N	V	A	R	K	L	Q	Q	S	D	G	P	K	P	P	W	A	D	R	Y	A	A	L	E	V	G	D	V	R	N
Template Known Secondary structure			.	.					T	T	T	S																									T	T	T	T	T			T	T	S													S		S	S			T	T	T	T								S		T	T
Template Predicted Secondary structure			.	.
Template SS confidence
	1	.			.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.

	68	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	T	S	N	L	T	R	I	L	R	E	V	Q	P	D	E	V	Y	N	L	G	A	M	S	H	V	A	V	S	F	E	S	P	E	Y	T	A	D	V	D	A	M	G	T	L	R	L	L	E	A	I	R	F	L	G	L	E	K	K	T	R	F	Y	Q	A	S	T	S	E	L	Y	G	L	V	Q	E	I	P	Q	K	E
Query Conservation
Alig confidence
Template Conservation
Template Sequence	E	D	F	L	N	G	V	F	T	R	H	G	P	I	D	A	V	V	H	M	C	A	F	L	A	V	G	E	S	V	R	D	P	L	K	Y	Y	D	N	N	V	V	G	I	L	R	L	L	Q	A	M	L	L	H	K	C	D	K	I	I	F	S	S	S	A	A	I	F	G	N	P	T	M	N	A	E	P	I	D	I
Template Known Secondary structure											S																																											T	T										G	G	G	T	B	S								B		T
Template Predicted Secondary structure
Template SS confidence
	79	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.

	148	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200											.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.
Predicted Secondary structure																																																						.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																						.	.	.	.	.	.	.	.	.	.
Query Sequence	T	T	P	F	Y	P	R	S	P	Y	A	V	A	K	L	Y	A	Y	W	I	T	V	N	Y	R	E	S	Y	G	M	Y	A	C	N	G	I	L	F	N	H	E	S	P	R	R	G	E	T	F	V	T	R	K	.	.	.	.	.	.	.	.	.	.	I	T	R	A	I	A	N	I	A	Q	G	L	E	S	C	L	Y
Query Conservation																																																						.	.	.	.	.	.	.	.	.	.
Alig confidence																																																						.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence	N	A	K	K	S	P	E	S	P	Y	G	E	S	K	L	I	A	E	R	M	I	R	D	C	A	E	A	Y	G	I	K	G	I	C	L	R	Y	F	N	A	C	G	A	H	E	D	G	D	I	G	E	H	Y	Q	G	S	T	H	L	I	P	I	I	L	G	R	V	M	S	D	I	A	P	D	D	K	R	M	P	I
Template Known Secondary structure	T	S			B		S	S																																					T	T	S	S		S			S	T	T			S														S
Template Predicted Secondary structure
Template SS confidence
	164	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.

	218	.	220	.							.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.											.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.
Predicted Secondary structure					.	.	.	.	.	.																											.	.	.	.	.	.	.	.	.	.
Query SS confidence					.	.	.	.	.	.																											.	.	.	.	.	.	.	.	.	.
Query Sequence	L	G	N	M	.	.	.	.	.	.	D	S	L	R	D	W	G	H	A	K	D	Y	V	K	M	Q	W	M	M	L	Q	Q	E	Q	P	E	.	.	.	.	.	.	.	.	.	.	D	F	V	I	A	T	G	V	Q	Y	S	V	R	Q	F	V	E	M	A	A	A	Q	L	G	I	K	L	R	F	E	G	T	G	V
Query Conservation					.	.	.	.	.	.																											.	.	.	.	.	.	.	.	.	.
Alig confidence					.	.	.	.	.	.																											.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence	F	G	T	D	Y	P	T	P	D	G	T	C	V	R	D	Y	V	H	V	C	D	L	A	S	A	H	I	L	A	L	D	Y	V	E	K	L	G	P	N	D	K	S	K	Y	F	S	V	F	N	L	G	T	S	R	G	Y	S	V	R	E	V	I	E	V	A	R	K	T	T	G	H	P	I	P	V	R	E	C	G	R
Template Known Secondary structure			S		S	S	S	T	T	S	S																								T			T	T	T	G	G	G	S							S		S
Template Predicted Secondary structure
Template SS confidence
	255	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.

	282	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	E	E	K	G	I	V	V	S	V	T	G	H	D	A	P	G	V	K	P	G	D	V	I	I	A	V	D	P	R	Y	F	R	P	A	E	V	E	T	L	L	G	D	P	T	K	A	H	E	K	L	G	W	K	P	E	I	T	L	R	E	M	V	S	E	M	V	A	N	D	L	E	A	A	K	K	H
Query Conservation
Alig confidence	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	R	E	G	D	P	A	Y	L	V	A	A	S	D	K	A	R	E	V	L	G	W	K	P	K	Y	D	T	L	E	A	I	M	E	T	S	W	K	F	Q	R	T	H	P	N	G
Template Known Secondary structure	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.		T	T			S				B									T					S			S														T		T	T	T
Template Predicted Secondary structure	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
																																335	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.

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No model constructed - rank, confidence too low

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server

Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]

© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys
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