Job Description P0AC88 Confidence 99.00% Date Thu Jan 5 11:17:36 GMT 2012 Rank 255 Aligned Residues 221 % Identity 18% Template c3uxyC_ PDB info PDB header:oxidoreductase Chain: C: PDB Molecule:short-chain dehydrogenase/reductase sdr; PDBTitle: the crystal structure of short chain dehydrogenase from rhodobacter2 sphaeroides Resolution 2.10 Å

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		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																																															.	.	.
Query SS confidence																																																																															.	.	.
Query Sequence		S	K	V	A	L	I	T	G	V	T	G	Q	D	G	S	Y	L	A	E	F	L	L	E	K	G	Y	E	V	H	G	I	K	R	R	A	S	S	F	N	T	E	R	V	D	H	I	Y	Q	D	P	H	T	C	N	P	K	F	H	L	H	Y	G	D	L	S	D	T	S	N	L	T	R	I	L	R	E	V	.	.	.
Query Conservation																																																																															.	.	.
Alig confidence																																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																						.	.	.
Template Conservation																																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		G	K	V	A	L	V	T	G	A	A	G	G	I	G	G	A	V	V	T	A	L	R	A	A	G	A	R	V	A	V	A	D	R	A	V	A	G	I	A	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	D	L	H	L	P	G	D	L	R	E	A	A	Y	A	D	G	L	P	G	A	V	A	A	G
Template Known Secondary structure		T						S	S	T	T	S													T	T							S	S			T	T				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S							T	T	S
Template Predicted Secondary structure																																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		6	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.																	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.
										79	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150
Predicted Secondary structure		.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	Q	P	D	E	V	Y	N	L	G	A	M	S	H	V	A	V	S	F	E	S	P	E	Y	T	A	D	V	D	A	M	G	T	L	R	L	L	E	A	I	R	F	L	G	L	E	K	K	T	R	F	Y	Q	A	S	T	S	E	L	Y	G	L	V	Q	E	I	P	Q	K	E	T	T	P
Query Conservation		.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.																																																																		.	.	.	.	.	.	.
Template Conservation																																																																											.	.	.	.	.	.	.
Template Sequence		L	G	R	L	D	I	V	V	N	N	A	G	V	I	S	R	G	R	I	T	E	T	T	D	A	D	W	S	L	S	L	G	V	N	V	E	A	P	F	R	I	C	R	A	A	I	P	L	X	A	A	A	G	G	G	A	I	V	N	V	A	S	C	W	G	L	R	P	G	P	G	H	A	.	.	.	.	.	.	.
Template Known Secondary structure			S															B		G	G	G														T																	T	T														B			T	T	B		.	.	.	.	.	.	.
Template Predicted Secondary structure																																																																											.	.	.	.	.	.	.
Template SS confidence
		70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.
		151	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.				.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.
Predicted Secondary structure																								.	.	.
Query SS confidence																								.	.	.
Query Sequence		F	Y	P	R	S	P	Y	A	V	A	K	L	Y	A	Y	W	I	T	V	N	Y	R	.	.	.	E	S	Y	G	M	Y	A	C	N	G	I	L	F	N	H	E	S	P	R	R	G	E	T	F	V	T	R	K	I	T	R	A	I	A	N	I	A	Q	G	L	E	S	C	L	Y	L	G	N	M	D	S	L	R	D	W
Query Conservation																								.	.	.
Alig confidence		.	.	.	.	.																		.	.	.																																														.	.	.	.	.	.	.	.
Template Conservation		.	.	.	.	.																																																																		.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	L	Y	C	L	T	K	A	A	L	A	S	L	T	Q	C	X	G	X	D	H	A	P	Q	G	I	R	I	N	A	V	C	P	N	E	V	N	T	P	X	L	R	T	G	F	A	K	R	G	F	D	P	D	R	A	V	A	E	L	G	R	T	V	P	L	G	.	.	.	.	.	.	.	.	R	I
Template Known Secondary structure		.	.	.	.	.																					G	G	G	T									S	S	B											T	T	T												T	T	S	T	T	S	.	.	.	.	.	.	.	.	S
Template Predicted Secondary structure		.	.	.	.	.																																																																		.	.	.	.	.	.	.	.
Template SS confidence
							143	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.									.	.
		228	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.					.	.	.	.	250	.	.	.	.	.	.	.	.
Predicted Secondary structure																				.	.	.	.
Query SS confidence																				.	.	.	.
Query Sequence		G	H	A	K	D	Y	V	K	M	Q	W	M	M	L	Q	Q	E	Q	.	.	.	.	P	E	D	F	V	I	A	T	G	V	Q	Y	S
Query Conservation																				.	.	.	.
Alig confidence																				.	.	.	.
Template Conservation
Template Sequence		A	E	P	E	D	I	A	D	V	V	L	F	L	A	S	D	A	A	R	Y	L	C	G	S	L	V	E	V	N	G	G	K	A	V	A
Template Known Secondary structure		B														S	G	G	G	T	T		S	S							T	T
Template Predicted Secondary structure
Template SS confidence
		210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions