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Job DescriptionP0AC88
Confidence99.93%DateThu Jan 5 11:17:36 GMT 2012
Rank72Aligned Residues216
% Identity15%Templatec3nzoB_
PDB info PDB header:lyaseChain: B: PDB Molecule:udp-n-acetylglucosamine 4,6-dehydratase; PDBTitle: udp-n-acetylglucosamine 4,6-dehydratase from vibrio fischeri.
Resolution2.10 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   2.......10.........20.........30.........40.........50.........60.........70.........80.
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Query Sequence  SKVALITGVTGQDGSYLAEFLLEKGYEVHGIKRRASSFNTERVDHIYQDPHTCNPKFHLHYGDLSDTSNLTRILREVQPD
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Template Sequence  QSRFLVLGGAGSIGQAVTKEIFKRNPQKLHVVDISENNXVELVRDIRSSFGYINGDFQTFALDIGSIEYDAFIKADGQYD
Template Known Secondary structure  T
TTTSTT

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   32.......40.........50.........60.........70.........80.........90.........100.........110.
 
   82.......90....... ..100.........110.........120.........130.........140.........150.........
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Query Sequence  EVYNLGAMSHVAVSFE. . SPEYTADVDAMGTLRLLEAIRFLGLEKKTRFYQASTSELYGLVQEIPQKETTPFYPRSPYAV
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Template Sequence  YVLNLSALKHVRSEKDPFTLXRXIDVNVFNTDKTIQQSIDAGAKKYFCVSTDKAAN. . . . . . . . . . . . . . . . . PVNXXGA
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GGGGSSTTT
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   112.......120.........130.........140.........150.........160....... ..170....
 
   160.........170.........180.........190.........200.........210.........220.........230.........
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Query Sequence  AKLYAYWITVNYRESYGMYACNGILFNHESPRRGETFVTRKITRAIANIAQGLESCLYLGNMDSLRDWGHAKDYVKMQWM
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Template Sequence  SKRIXEXFLXRK. . SEEIAISTARFANVAFSDGS. . . . . . . . . . . . . . . . . . . . . . RIQKNQPIKRYFVTPQESGELCLX
Template Known Secondary structure  ..TTTS



BTT
TT
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B
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   175....180...... ...190.........200...... ...210.........220.........230
 
   240..... ....250........
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Query Sequence  MLQQEQ. PEDFVIATGVQYS
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Template Sequence  SCIFGENRDIFFPKDXARFD
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   244.....250.........260...
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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