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Job DescriptionP0AC88
Confidence98.95%DateThu Jan 5 11:17:36 GMT 2012
Rank273Aligned Residues216
% Identity14%Templatec3emkA_
PDB info PDB header:oxidoreductaseChain: A: PDB Molecule:glucose/ribitol dehydrogenase; PDBTitle: 2.5a crystal structure of glucose/ribitol dehydrogenase2 from brucella melitensis
Resolution2.50 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   2.......10.........20.........30.........40.........50.........60.........70.........80.
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Query Sequence  SKVALITGVTGQDGSYLAEFLLEKGYEVHGIKRRASSFNTERVDHIYQDPHTCNPKFHLHYGDLSDTSNLTRILREVQPD
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Template Sequence  GRKALVTGATGGLGEAIARALHAQGAIVGLHGTRE. . . . . . . . EKLKELAAELGERIFVFPANLSDREAVKALGQKAEEE
Template Known Secondary structure  T
TTTTSTT
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   6...10.........20.........30.........40 .........50.........60.........70.......
 
   82.......90........ .100.........110.........120.........130.........140.........150
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Query Sequence  EVYNLGAMSHVAVSFES. . . . . . . . . . . PEYTADVDAMGTLRLLEAIRFLGLEKKTRFYQASTSELYGLVQEIPQKETTP
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Template Sequence  MGGVDILVNNAGITRDGLFVRMSDEDWDAVLTVNLTSVFNLTRELTHPMMRRRNGRIINITSIVGVTGNPGQA. . . . . . .
Template Known Secondary structure  TTS










GGG

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   78.80.........90.........100.........110.........120.........130.........140.........150
 
   151........160.........170..... ....180.........190.........200.........210.........220.......
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Query Sequence  FYPRSPYAVAKLYAYWITVNYRESY. . . GMYACNGILFNHESPRRGETFVTRKITRAIANIAQGLESCLYLGNMDSLRDW
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Template Sequence  . . . . . NYCASKAGLIGFSKSLAQEIASRNVTVNCIAPGFIESAM. . . . . . . . . . EKQKDAIMGNIPMK. . . . . . . . . . RM
Template Known Secondary structure  .....GGGT
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   151........160.........170.........180......... 190.........200... ..
 
   228.230.........240.... .....250.......
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Query Sequence  GHAKDYVKMQWMMLQQE. . . . QPEDFVIATGVQY
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Template Sequence  GVGADIAAAVVYLASDEAAYVTGQTLHVNGGMAM
Template Known Secondary structure  B
SGGGTT

S
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   211........220.........230.........240....
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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