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Job DescriptionP0AC88
Confidence100.00%DateThu Jan 5 11:17:36 GMT 2012
Rank38Aligned Residues293
% Identity21%Templatec2q1wC_
PDB info PDB header:sugar binding proteinChain: C: PDB Molecule:putative nucleotide sugar epimerase/ dehydratase; PDBTitle: crystal structure of the bordetella bronchiseptica enzyme wbmh in2 complex with nad+
Resolution2.19 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   1........10.........20.........30.........40.........50.........60.........70.........80
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Query Sequence  MSKVALITGVTGQDGSYLAEFLLEKGYEVHGIKRRASSFNTERVDHIYQDPHTCNPKFHLHYGDLSDTSNLTRILREVQP
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Template Sequence  MKK. VFITGICGQIGSHIAELLLERGDKVVGIDNFATGRR. . . . . . . . . EHLKDHPNLTFVEGSIADHALVNQLIGDLQP
Template Known Secondary structure 

.TTTSTT


SS

G.........GGS


TT

TT


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   1.. ......10.........20.........30......... 40.........50.........60.........70
 
   81........90.........100.........110.........120.........130.........140.........150.........160
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Query Sequence  DEVYNLGAMSHVAVSFESPEYTADVDAMGTLRLLEAIRFLGLEKKTRFYQASTSELYGLVQEIPQKETTPFYPRSPYAVA
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Template Sequence  DAVVHTAASYKDPD. . . DWYNDTLTNCVGGSNVVQAAKKNNVGRFVYFQTALCYGVKPIQQPV. . . . . RLDHPRNPANSS
Template Known Secondary structure  S




S
TT...
TTT
SGGGG
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SSSSB.....
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TT
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   71........80.... .....90.........100.........110.........120.........130 .........140..
 
   161........170.........180.........190.........200.........210.........220.........230.........240
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Query Sequence  KLYAYWITVNYRESYGMYACNGILFNHESPRRGETFVTRKITRAIANIAQGLESCLYLGNMDSLRDWGHAKDYVKMQWMM
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Template Sequence  YAISKSANEDYLEYSGLDFVTFRLANVVGPRNS. . . . . GPLPIFFQRLSEGKKCFVT. . . . KARRDFVFVKDLARATVRA
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S
STT

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   143......150.........160.........170..... ....180.........190.... .....200.........210...
 
   241........250.........260.........270.........280.........290.........300.........310.........320
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Query Sequence  LQQEQPEDFVIATGVQYSVRQFVEMAAAQLGIKLRFEGTGVEEKGIVVSVTGHDAPGVKPGDVIIAVDPRYFRPAEVETL
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Template Sequence  VDGVGHGAYHFSSGTDVAIKELYDAVVEAMALPSYPEPEIR. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . ELGAPSI
Template Known Secondary structure  TT



S
S

T
S




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B
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   215....220.........230.........240.........250..... ....260..
 
   321........330.........340.........350..
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Query Sequence  LGDPTKAHEKLGWKPEITLREMVSEMVANDLE
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Template Sequence  LLDPSRTIQDFGKIEFTPLKETVAAAVAYFRE
Template Known Secondary structure 
B


S




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   266...270.........280.........290.......
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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