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Job DescriptionP0AC88
Confidence100.00%DateThu Jan 5 11:17:36 GMT 2012
Rank2Aligned Residues320
% Identity22%Templatec1z7eC_
PDB info PDB header:hydrolaseChain: C: PDB Molecule:protein arna; PDBTitle: crystal structure of full length arna
Resolution3.00 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   2.......10.........20...... ...30.........40.........50.........60.........70.........80
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Query Sequence  SKVALITGVTGQDGSYLAEFLLEKG. YEVHGIKRRASSFNTERVDHIYQDPHTCNPKFHLHYGDLSDTSNLTRILREVQP
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Template Sequence  RTRVLILGVNGFIGNHLTERLLREDHYEVYGLDIGSDAIS. . . . . . . . . . RFLNHPHFHFVEGDISIHSEWIEYHVK. KC
Template Known Secondary structure 
TTTSSSSS

TTTG..........GGTT
TT

TTT
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   315....320.........330.........340.........350.... .....360.........370.........380. ..
 
   81........90.........100.........110.........120.........130.........140.........150.. .
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Query Sequence  DEVYNLGAMSHVAVSFESPEYTADVDAMGTLRLLEAIRFLGLEKKTRFYQASTSELYGLVQEIPQKETTPFY. . . . . . . P
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Template Sequence  DVVLPLVAIATPIEYTRNPLRVFELDFEENLRIIRYCVKYR. . . . KRIIFPSTSEVYGMCSDKYFDEDHSNLIVGPVNKP
Template Known Secondary structure  S





TSTTT....


GGGGBT

SSSB
TTT


B


TT
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   384.....390.........400.........410.........420.... .....430.........440.........450.........
 
   154.....160.........170.........180.........190...... ...200.........210.........220.........
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Query Sequence  RSPYAVAKLYAYWITVNYRESYGMYACNGILFNHESPRRGETF. . . . VTRKITRAIANIAQGLESCLYLGNMDSLRDWGH
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Template Sequence  RWIYSVSKQLLDRVIWAYGEKEGLQFTLFRPFNWMGPRLDNLNAARIGSSRAITQLILNLVEGSPIKLIDGGKQKRCFTD
Template Known Secondary structure  T



SSTTSS
TTT
S
T

GGG


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   460.........470.........480.........490.........500.........510.........520.........530.........
 
   230.........240..... ....250...... ...260.........270.........280.........290.........300....
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Query Sequence  AKDYVKMQWMMLQQEQ. . . . PEDFVIATGVQ. YSVRQFVEMAAAQLGIKLRFEGTGVEEKGIVVSVTGHDAPGVKPGDVI
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Template Sequence  IRDGIEALYRIIENAGNRCDGEIINIGNPENEASIEELGEMLLASFEKHPLRHHFPP. . . . . . . . . . . . . . . . FAGFRVV
Template Known Secondary structure  TGGGTTTT

GGG
TTGGGS

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   540.........550.........560.........570.........580.........590...... ...600...
 
   305....310.........320.........330.........340.........350..
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Query Sequence  IAVDPRYFRPAEVETLLGDPTKAHEKLGWKPEITLREMVSEMVANDLE
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Template Sequence  ESSSYYGKGYQDVEHRKPSIRNAHRCLDWEPKIDMQETIDETLDFFLR
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T
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   604.....610.........620.........630.........640.........650.
 
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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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