Job Description P0A7H0 Confidence 99.69% Date Thu Jan 5 11:05:39 GMT 2012 Rank 20 Aligned Residues 200 % Identity 21% Template c2yyzA_ PDB info PDB header:transport protein Chain: A: PDB Molecule:sugar abc transporter, atp-binding protein; PDBTitle: crystal structure of sugar abc transporter, atp-binding protein Resolution 2.11 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		5	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.		.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.
Predicted Secondary structure																						.
Query SS confidence																						.
Query Sequence		R	L	L	I	R	D	F	R	N	I	E	T	A	D	L	A	L	S	P	G	.	F	N	F	L	V	G	A	N	G	S	G	K	T	S	V	L	E	A	I	Y	T	L	G	H	G	R	A	F	R	S	L	Q	I	G	R	V	I	R	H	E	Q	E	A	F	V	L	H	G	R	L	Q	G	E	E	R	E	T	A	I
Query Conservation																						.
Alig confidence																						.																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		K	K	Y	F	G	K	V	K	A	V	D	G	V	S	F	E	V	K	D	G	E	F	V	A	L	L	G	P	S	G	C	G	K	T	T	T	L	L	M	L	A	G	I	Y	K	P	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure						T	T													T	T								S	T	T	S	S										T	S	S			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.
		84	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	L	T	K	D	K	Q	G	D	S	K	V	R	I	D	G	T	D	G	H	K	V	A	E	L	A	H	L	M	P	M	Q	L	I	T	P	E	G	F	T	L	L	N	G	G	P	K	Y	R	R	A	F	L	D	W	G	C	F	H	N	E	P	G	F	F	T	A	W	S	N	L	K	R	L	L	K	Q	R	N	A
Query Conservation
Alig confidence		.	.	.	.	.	.	.																																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.																																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	T	S	G	E	I	Y	F	D	D	V	L	V	N	D	I	P	P	K	Y	R	E	V	G	M	V	F	Q	N	Y	A	L	Y	P	H	M	T	V	F	E	N	I	A	F	P	L	R	A	R	R	I	S	K	D	E	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure		.	.	.	.	.	.	.	S							T	T				T	T	S		G	G	G	T	T						S	S					T	T	S								G	G	G	S	S	S		S					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure		.	.	.	.	.	.	.																																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
									56	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.
		164	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	L	R	Q	V	T	R	Y	E	Q	L	R	P	W	D	K	E	L	I	P	L	A	E	Q	I	S	T	W	R	A	E	Y	S	A	G	I	A	A	D	M	A	D	T	C	K	Q	F	L	P	E	F	S	L	T	F	S	F	Q	R	G	W	E	K	E	T	E	Y	A	E	V	L	E	R	N	F	E	R	D	R	Q
Query Conservation
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		244	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	T	Y	T	A	H	G	P	H	K	A	D	L	R	I	R	A	D	G	A	P	V	E	D	T	L	S	R	G	Q	L	K	L	L	M	C	A	L	R	L	A	Q	G	E	F	L	T	R	E	S	G	R	R	C	L	Y	L	I	D	D	F	A	S	E	L	D	D	E	R	R	G	L	L	A	S	R	L	K	A	T
Query Conservation
Alig confidence		.																																										.	.	.	.	.	.	.	.	.
Template Conservation		.																																										.	.	.	.	.	.	.	.	.
Template Sequence		.	V	E	K	R	V	V	E	I	A	R	K	L	L	I	D	N	L	L	D	R	K	P	T	Q	L	S	G	G	Q	Q	Q	R	V	A	L	A	R	A	L	V	K	.	.	.	.	.	.	.	.	.	Q	P	K	V	L	L	F	D	E	P	L	S	N	L	D	A	N	L	R	M	I	M	R	A	E	I	K	H	L
Template Known Secondary structure		.	T	T										T	T		G	G	G	T	T	S		G	G	G	S															T	T	.	.	.	.	.	.	.	.	.			S						S	T	T	T	T	S
Template Predicted Secondary structure		.																																										.	.	.	.	.	.	.	.	.
Template SS confidence
			110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150										.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.
						324	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.
Query SS confidence		.	.	.	.
Query Sequence		.	.	.	.	Q	S	Q	V	F	V	S	A	I	S	A	E	H	V	I	D	M	S	D	E	N	S	K	M	F	T	V	E	K	G	K	I	T	D
Query Conservation		.	.	.	.
Alig confidence		.	.	.	.																					.	.	.
Template Conservation																										.	.	.
Template Sequence		Q	Q	E	L	G	I	T	S	V	Y	V	T	H	D	Q	A	E	A	M	T	M	A	S	R	.	.	.	I	A	V	F	N	Q	G	K	L	V	Q
Template Known Secondary structure														S										S		.	.	.						T	T
Template Predicted Secondary structure																										.	.	.
Template SS confidence
		180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.				.	.	.	.	.	.	210	.	.	.	.

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions