 |
Job Description | P0A7H0 | Confidence | 98.91% | Date | Thu Jan 5 11:05:39 GMT 2012 |
Rank | 73 | Aligned Residues | 85 |
% Identity | 22% | Template | c2r6fA_ |
PDB info |
PDB header:hydrolase | Chain: A: PDB Molecule:excinuclease abc subunit a; |
PDBTitle: crystal structure of bacillus stearothermophilus uvra
|
Resolution | 3.20 Å |
|
 |
  |   |
263 | . | . | . | . | . | . | 270 | . | . | . | . | . | . | . | . | . | 280 | . | . | . | . | . | . | . | . | . | 290 | . | . | . | . | . | . | . | . | . | 300 | . | . | . | . | . | . | . | . | . | 310 | . | . | . | . | . | . | . | . | . | 320 | . | . | . | |
|
|
. | . | . | . | . | . | 330 | . | . | . | . | . | . | . | . | . |
Predicted Secondary structure |   |
|
|
|  |  |  |
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |
| . | . | . |
|
|  |  |  |  |  |  |
|
|  |  |  |  |  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
A | P | V | E | D | T | L | S | R | G | Q | L | K | L | L | M | C | A | L | R | L | A | Q | G | E | F | L | T | R | E | S | G | R | R | C | L | Y | L | I | D | D | F | A | S | E | L | D | D | E | R | R | G | L | L | A | S | R | L | K | A | T | . |
. |
. |
Q | S | Q | V | F | V | S | A | I | S | A | E | H | V | I | D |
Query Conservation |   |
  |   |   |   |   |   |   |
|   |
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|
|
|
|
|
|
|
|   |   |
|
|
|   |   |
|   |   |
|   |   |   |
|   |   |   | . | . | . |   |   |
|
|
|
|
|
|
|
|   |   |   |
|   |   |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |   |   |
|   |   |
|
|
|
|
|
|
|
| . | . | . | . | . | . |
|   |
|
|
|
|
|
|   |   |   |   |   |
|
|
|
|
|
|
|
|
|
|
|   |
|
|   |   |
|   |   |   |
|   |   |   |
|   |   |   |   |   |   |
|   |
|
|
|   |
|
|
|
|
|   |
|
|   |   |
Template Sequence |   |
G | Q | P | A | T | T | L | S | G | G | E | A | Q | R | . |
. |
. |
. |
. |
. |
V | K | L | A | A | E | L | H | R | R | S | N | G | R | T | L | Y | I | L | D | E | P | T | T | G | L | H | V | D | D | I | A | R | L | L | D | V | L | H | R | L | V | D | N | G | D | T | V | L | V | I | E | H | N | L | D | V | I | K | T |
Template Known Secondary structure |   |
T |
|
| G | G | G |
|
|  |  |  |  |  |  | . | . | . | . | . | . |  |  |  |  |  |  |  | S | S |
|
|
| S |
|  |  |  |  |  |  |
| T | T | T | T |
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | T | T |
|  |  |  |  |  |
|
|
|  |  |  |  | T | T |
Template Predicted Secondary structure |   |
|
|
|
|
|
|
|
|  |  |  |  |  |  | . | . | . | . | . | . |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|  |  |  |  |  |
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |
|
|
|  |  |  |  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
820 | . | . | . | . | . | . | . | . | . | 830 | . | . | . | |
|
|
|
|
|
. | . | . | . | . | . | 840 | . | . | . | . | . | . | . | . | . | 850 | . | . | . | . | . | . | . | . | . | 860 | . | . | . | . | . | . | . | . | . | 870 | . | . | . | . | . | . | . | . | . | 880 | . | . | . | . | . | . | . | . | . | 890 | . | . | . |
  |
  |   |
340 | . | . | . | . | . | . | . | . | . | 350 | |
|
|
|
|
|
. | . | . | . | . | . | . |
Predicted Secondary structure |   |
|
|
|
|
|  |  |  |  |  |  | . | . | . | . | . | . |
|
|
|  |  |
|
|
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
. |
. |
. |
|
|
|
|
|
|
|
Query Sequence |   |
M | S | D | E | N | S | K | M | F | T | V | . |
. |
. |
. |
. |
. |
E | K | G | K | I | T | D |
Query Conservation |   |
  |   |   |   |   |   |   |
|   |   |
| . | . | . | . | . | . |   |   |
|   |
|   |
|
Alig confidence |   |
| . | . | . | . |
|
|
|
|
|
| . | . | . | . | . | . |
|
|
|
|
|
|
|
Template Conservation |   |
  | . | . | . | . |
|   |
|   |
|
|   |   |   |   |   |   |
|   |
|   |
|
|
|
Template Sequence |   |
A | . |
. |
. |
. |
D | Y | I | I | D | L | G | P | E | G | G | D | R | G | G | Q | I | V | A |
Template Known Secondary structure |   |
| . | . | . | . | S |  |  |  |  |  |
| S | S | S | T | T | S |
|
| S |  |  |  |
Template Predicted Secondary structure |   |
| . | . | . | . |
|  |  |  |  |
|
|
|
|
|
|
|
|
|
|  |  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
894 | |
|
|
|
. | . | . | . | . | 900 | . | . | . | . | . | . | . | . | . | 910 | . | . | . |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|