Job Description P0A7H0 Confidence 99.67% Date Thu Jan 5 11:05:39 GMT 2012 Rank 29 Aligned Residues 197 % Identity 18% Template c2hydB_ PDB info PDB header:transport protein Chain: B: PDB Molecule:abc transporter homolog; PDBTitle: multidrug abc transporter sav1866 Resolution 3.00 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		13	.	.	.	.	.	.	20	.	.	.	.		.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.
Predicted Secondary structure														.
Query SS confidence														.
Query Sequence		N	I	E	T	A	D	L	A	L	S	P	G	.	F	N	F	L	V	G	A	N	G	S	G	K	T	S	V	L	E	A	I	Y	T	L	G	H	G	R	A	F	R	S	L	Q	I	G	R	V	I	R	H	E	Q	E	A	F	V	L	H	G	R	L	Q	G	E	E	R	E	T	A	I	G	L	T	K	D	K	Q	G
Query Conservation														.
Alig confidence														.																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		I	L	K	D	I	N	L	S	I	E	K	G	E	T	V	A	F	V	G	M	S	G	G	G	K	S	T	L	I	N	L	I	P	R	F	Y	D	V	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T
Template Known Secondary structure		S										T	T								S	T	T	S	S						T	T	T	T	T	S	S			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S
Template Predicted Secondary structure																																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		356	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.																																										.
		92	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	S	K	V	R	I	D	G	T	D	G	H	K	V	A	E	L	A	H	L	M	P	M	Q	L	I	T	P	E	G	F	T	L	L	N	G	G	P	K	Y	R	R	A	F	L	D	W	G	C	F	H	N	E	P	G	F	F	T	A	W	S	N	L	K	R	L	L	K	Q	R	N	A	A	L	R	Q	V	T	R	Y
Query Conservation
Alig confidence																						.																																																										.	.
Template Conservation																						.																																																										.	.
Template Sequence		S	G	Q	I	L	I	D	G	H	N	I	K	D	F	L	T	G	S	L	R	.	N	Q	I	G	L	V	Q	Q	D	N	I	L	F	S	D	T	V	K	E	N	I	L	L	G	R	P	T	A	T	D	E	E	V	V	E	A	A	K	M	A	N	A	H	D	F	I	M	N	L	P	Q	G	Y	D	T	E	V	.	.
Template Known Secondary structure								T	T			G	G	G	S							.		T						S	S					S	S	B						G	G	G		S	S													T	T							T	S	T	T	G	G	G		B		.	.
Template Predicted Secondary structure																						.																																																										.	.
Template SS confidence
		395	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.		.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.
		172	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	Q	L	R	P	W	D	K	E	L	I	P	L	A	E	Q	I	S	T	W	R	A	E	Y	S	A	G	I	A	A	D	M	A	D	T	C	K	Q	F	L	P	E	F	S	L	T	F	S	F	Q	R	G	W	E	K	E	T	E	Y	A	E	V	L	E	R	N	F	E	R	D	R	Q	L	T	Y	T	A	H	G	P
Query Conservation
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		252	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.			.	.	.	.	.	.
Predicted Secondary structure																																																																										.	.
Query SS confidence																																																																										.	.
Query Sequence		H	K	A	D	L	R	I	R	A	D	G	A	P	V	E	D	T	L	S	R	G	Q	L	K	L	L	M	C	A	L	R	L	A	Q	G	E	F	L	T	R	E	S	G	R	R	C	L	Y	L	I	D	D	F	A	S	E	L	D	D	E	R	R	G	L	L	A	S	R	L	K	A	T	.	.	Q	S	Q	V	F	V
Query Conservation																																																																										.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.																								.	.	.	.	.	.	.	.	.																														.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.																								.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	G	E	R	G	V	K	L	S	G	G	Q	K	Q	R	L	S	I	A	R	I	F	L	N	.	.	.	.	.	.	.	.	.	N	P	P	I	L	I	L	D	E	A	T	S	A	L	D	L	E	S	E	S	I	I	Q	E	A	L	D	V	L	S	K	D	R	T	T	L	I
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.		G	G	G	T	T	S																	.	.	.	.	.	.	.	.	.			S						S	T	T	T	T																	T	T	T	S
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.																								.	.	.	.	.	.	.	.	.
Template SS confidence
													472	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.										.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.
		330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	A	I	S	A	E	H	V	I	D	M	S	D	E	N	S	K	M	F	T	V	E	K	G	K	I	T	D
Query Conservation
Alig confidence													.	.	.	.
Template Conservation													.	.	.	.
Template Sequence		V	A	H	R	L	S	T	I	T	H	A	.	.	.	.	D	K	I	V	V	I	E	N	G	H	I	V	E
Template Known Secondary structure				S	S	G	G	G	T	T	T		.	.	.	.	S							T	T
Template Predicted Secondary structure													.	.	.	.
Template SS confidence
		532	.	.	.	.	.	.	.	540	.	.					.	.	.	.	.	.	.	550	.	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions