Job Description P77257 Confidence 96.07% Date Thu Jan 5 12:26:54 GMT 2012 Rank 335 Aligned Residues 124 % Identity 16% Template c3io5B_ PDB info PDB header:dna binding protein Chain: B: PDB Molecule:recombination and repair protein; PDBTitle: crystal structure of a dimeric form of the uvsx recombinase core2 domain from enterobacteria phage t4 Resolution 2.40 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		35	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.		.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.
Predicted Secondary structure																													.
Query SS confidence																													.
Query Sequence		H	Q	G	E	V	H	A	L	L	G	G	N	G	A	G	K	S	T	L	M	K	I	I	A	G	I	T	.	P	A	D	S	G	T	L	E	I	E	G	N	N	Y	V	R	L	T	P	V	H	A	H	Q	L	G	I	Y	L	V	P	Q	E	P	L	L	F	P	S	L	S	I	K	E	N	I	L	F	G	L	A	K
Query Conservation																													.
Alig confidence					.																								.																												.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation					.																																																				.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		Q	S	G	.	L	L	I	L	A	G	P	S	K	S	F	K	S	N	F	G	L	T	M	V	S	S	Y	M	R	Q	Y	P	D	A	V	C	L	F	Y	D	S	E	F	G	I	T	P	A	Y	L	R	S	M	G	V	.	.	.	.	.	.	.	.	.	.	.	.	.	D	P	E	R	V	I	H	T	P	V	Q	S
Template Known Secondary structure			S		.								S	S	S	S																	T	T								S	S											T	T		.	.	.	.	.	.	.	.	.	.	.	.	.		G	G	G							S	B
Template Predicted Secondary structure					.																																																				.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		52	.	.		.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.														.	.	.	.	110	.	.	.	.	.	.	.
		114	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.					.	.
Predicted Secondary structure																																																																												.	.	.	.
Query SS confidence																																																																												.	.	.	.
Query Sequence		K	Q	L	S	M	Q	K	M	K	N	L	L	A	A	L	G	C	Q	F	D	L	H	S	L	A	G	S	L	D	V	A	D	R	Q	M	V	E	I	L	R	G	L	M	R	D	S	R	I	L	I	L	D	E	P	T	A	S	L	T	P	A	E	T	E	R	L	F	S	R	L	Q	E	L	L	.	.	.	.	A	T
Query Conservation																																																																												.	.	.	.
Alig confidence																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																.	.	.	.
Template Conservation																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		L	E	Q	L	R	I	D	M	V	N	Q	L	D	A	I	E	R	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	E	K	V	V	V	F	I	D	S	L	G	N	L	A	S	K	T	R	A	K	T	M	K	S	L	F	R	I	V	T	P	Y	F	S	T	K
Template Known Secondary structure															T			T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T										S	T	T		B																						T
Template Predicted Secondary structure																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		118	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.																											.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.
		190	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	V	G	I	V	F	I	S	H
Query Conservation
Alig confidence
Template Conservation
Template Sequence		N	I	P	C	I	A	I	N	H
Template Known Secondary structure		T
Template Predicted Secondary structure
Template SS confidence
		187	.	.	190	.	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions