Return to main results Retrieve Phyre Job Id

Job DescriptionP77257
Confidence100.00%DateThu Jan 5 12:26:54 GMT 2012
Rank4Aligned Residues453
% Identity19%Templatec3bk7A_
PDB info PDB header:hydrolyase/translationChain: A: PDB Molecule:abc transporter atp-binding protein; PDBTitle: structure of the complete abce1/rnaase-l inhibitor protein2 from pyrococcus abysii
Resolution2.80 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   7..10....... ..20.. .......30.........40.........50.........60.........70.......
Predicted Secondary structure 



........
.

























Query SS confidence 










. . . . . . . .




.






















































Query Sequence  RALPLLCARSV. . . . . . . . YKQYS. GVNVLKGIDFTLHQGEVHALLGGNGAGKSTLMKIIAGITPADSGTLEIEGNNYVR
Query Conservation     
 
    
........
    .    
  


 
  

   


 








  
 
      
 
   
     
Alig confidence 










........




.









.











































Template Conservation      

 
 


          
    
 
  
  . 
 

 




 











 
 
 
  
        
  
Template Sequence  CPFNAISIVNLPEQLDEDCVHRYGVNAFVLYRLPI. VKDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDNVIR
Template Known Secondary structure 
SS



TTGGGS
STT





.

TTS

TTSSTTSS


TTTT


Template Predicted Secondary structure 




















.






















Template SS confidence 















































































   65....70.........80.........90......... 100.........110.........120.........130.........140...
 
   78 .80.........90.........100. ........110.........120.........130.........140....
Predicted Secondary structure 
..........












...



















Query SS confidence 
. . . . . . . . . .






















. . .










































Query Sequence  L. . . . . . . . . . TPVHAHQLGIYLVPQEPLLFPSL. . . SIKENILFGLAKKQLSMQKMKNLLAALGCQFDLHSLAGSLDVA
Query Conservation   ..........         
  
 
        ...

 
 
                 
   
    
      



Alig confidence 
..........






















...





.....































Template Conservation        
                                   
.....            
  


   
      



Template Sequence  AFRGNELQNYFERLKNGEIRPVVKPQYVDLLPKAVKGKVRELL. . . . . KKVDEVGKFEEVVKELELENVLDRELHQLSGG
Template Known Secondary structure  TTTSTTS



S
GGGGGGT

SB.....T

SS
TT
TTGGGSBGGG

Template Predicted Secondary structure 




.....








Template SS confidence 















































































   144.....150.........160.........170.........180...... ...190.........200.........210........
 
   145....150.........160.........170.........180.........190.........200.........210.........220....
Predicted Secondary structure 























Query SS confidence 















































































Query Sequence  DRQMVEILRGLMRDSRILILDEPTASLTPAETERLFSRLQELLATGVGIVFISHKLPEIRQIADRISVMRDGTIALSGKT
Query Conservation 
  

 

 

   
 







  

      
   
  
   
 


 


    
    


  
  
 
      
Alig confidence 















































































Template Conservation 




 

 

   
 








 

      
   
  
   
 







   

  

 
 

 
         
Template Sequence  ELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANEGKAVLVVEHDLAVLDYLSDVIHVVYGEPGVYGIFS
Template Known Secondary structure  S

S
TTTT

TT

S

SS
TTT
Template Predicted Secondary structure 





















Template SS confidence 















































































   219220.........230.........240.........250.........260.........270.........280.........290........
 
   225....230...... ...240.........250.........260.........270....... ..280.........290.........
Predicted Secondary structure 
.


































....

















Query SS confidence 











.








































. . . .





















Query Sequence  SELSTDDIIQAI. TPAVREKSLSASQKLWLELPGNRPQHAAGTPVLTLENLTGE. . . . GFRNVSLTLNAGEILGLAGLVG
Query Conservation              .                                
        .... 
  


 
  

   
 
 

Alig confidence 











.








































....





















Template Conservation                          
                                  
      
  

 
 
 
 

Template Sequence  KPKGTRNGINEFLQGYLKDENVRFRPYEIRFTKLSERVDVERETLVEYPRLVKDYGSFKLEVEPGEIRKGEVIGIVGPNG
Template Known Secondary structure 

TTTTT

SS





STTS








SS


TT


TT
Template Predicted Secondary structure 

























Template SS confidence 















































































   299300.........310.........320.........330.........340.........350.........360.........370........
 
   300.........310.........320.........330.........340.........350.........360.........370.........
Predicted Secondary structure 





































Query SS confidence 















































































Query Sequence  AGRTELAETLYGLRTLRGGRIMLNGKEINKLSTGERLLRGLVYLPEDRQSSGLNLDASLAWNVCALTHNLRGFWAKTAKD
Query Conservation 






  
 
      
 
   
               
    
      
    

   
                 
Alig confidence 























..............










...
















.......



Template Conservation 







 
 
   
  
 
   ..............  
    
   ...     

          .......    
Template Sequence  IGKTTFVKMLAGVEEPTEGKVEWD. . . . . . . . . . . . . . LTVAYKPQYIK. . . AEYEGTVYELLSKIDSS. . . . . . . KLNS
Template Known Secondary structure  SSTSS

SBS




..............


SS

...


SSB.......
Template Predicted Secondary structure 










..............





...







.......


Template SS confidence 















































































   379380.........390.........400.. .......410... ......420.........430 ....
 
   380.........390.........400.........410.........420.........430.........440.........450.. ......
Predicted Secondary structure 






















.

Query SS confidence 








































































.





Query Sequence  NATLERYRRALNIKFNQPEQAARTLSGGNQQKILIAKCLEASPQVLIVDEPTRGVDVSARNDIYQLLRSIAAQ. NVAVLL
Query Conservation                          




 


 

 

   
 







  

      
   
  
   .
 


 
Alig confidence 













.

























































.





Template Conservation        

  
 
 .         








 




   
 







  

   
  
   
  
    
 


 
Template Sequence  NFYKTELLKPLGII. DLYDRNVEDLSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALV
Template Known Secondary structure  TT
T.TTTTSBGGG

TS

S
TTTT

TT
Template Predicted Secondary structure 


.



















Template SS confidence 















































































   435....440........ .450.........460.........470.........480.........490.........500.........510...
 
   459460.........470....... ..480.........490
Predicted Secondary structure 



..



Query SS confidence 


















. .












Query Sequence  ISSDLEEIELMADRVYVMH. . QGEITHSALTERD
Query Conservation 



       



  
 .. 
 
   
     
Alig confidence 


















..












Template Conservation 



        




  
              
Template Sequence  VEHDVLMIDYVSDRLIVFEGEPGRHGRALPPMGM
Template Known Secondary structure 
S

STTT


Template Predicted Secondary structure 










Template SS confidence 

































   514.....520.........530.........540.......
 
Download:Text version FASTA pairwise alignment 3D Model in PDB format

View in Jmol

Send structure to FirstGlance for more viewing options


Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions