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Job DescriptionP77257
Confidence98.93%DateThu Jan 5 12:26:54 GMT 2012
Rank84Aligned Residues199
% Identity20%Templatec3auyB_
PDB info PDB header:recombinationChain: B: PDB Molecule:dna double-strand break repair rad50 atpase; PDBTitle: crystal structure of rad50 bound to adp
Resolution2.70 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   910.........20 .........30.........40.........50........ .60.........
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Query Sequence  LPLLCARSVYKQ. YSGVNVLKGIDFTLHQGEVHALLGGNGAGKSTLMKIIA. . . . . . . . . . . . . . . . . . GITPADSGTLE
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Template Sequence  MSM. ILKEIRMNNFKS. . . HVNSRIKFEKG. IVAIIGENGSGKSSIFEAVFFALFGAGSFNYDTIITKGKKSVYVELDFE
Template Known Secondary structure 

.TT...

S.
TTSS
S



GGGTB
TT
S
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   1.. ......10..... ....20...... ...30.........40.........50.........60.........70.....
 
   70.........80.........90.........100.........110.........120...
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Query Sequence  IEGNNYVRLTPVHAHQLGIYLVPQEPLLFPSLSIKENILFGLAKKQLSMQKMKN. . . . . . . . . . . . . . . . . . . . . . . . . .
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Template Sequence  VNGNNYKIIREYDSGRGGAKLYKNGKPYATTISAVNKAVNEILGVDRNMFLNSIYIKQGEIAKFLSLKPSEKLETVAKLL
Template Known Secondary structure  TTTTTT
S
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TTS
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   77..80.........90.........100.........110.........120.........130.........140.........150......
 
  
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Query Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
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Template Sequence  GIDEFEKCYQKMGEIVKEYEKRLERIEGELNYNLEKEKEKLTKFVEYLDKVRRIFGRNGFQAYLREKYVPLIQKYLNEAF
Template Known Secondary structure  T

TTTTTTTTT
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   157..160.........170.........180.........190.........200.........210.........220.........230......
 
   124.....130.........140.........150...... ...160.........170.........180..
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Query Sequence  . . . . . . . . . . . . . . LLAALGCQFDLHSLAGSLDVADRQMVEILRGLM. . . . . . . RDSRILILDEPTASLTPAETERLFSR
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Template Sequence  SEFDLPYSFVELTKDFEVRVHAPNGVLTIDNLSGGEQIAVALSLRLAIANALIGNRVECIILDEPTVYLDENRRAKLAEI
Template Known Secondary structure  TT
S
STTTTTGGGS
SS

SSTTTT

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   884.....890.........900.........910.........920.........930.........940.........950.........960...
 
   183......190.........200.........210....
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Query Sequence  LQELLATGVGIVFISHKLPEIRQIADRISVMR
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Template Sequence  FRKVKS. IPQMIIITHHRE. LEDVADVIINVK
Template Known Secondary structure 

S.SSS
GG.GGGG
S
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   964..... 970.........980. ........990...
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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