Return to main results Retrieve Phyre Job Id

Job DescriptionP77257
Confidence100.00%DateThu Jan 5 12:26:54 GMT 2012
Rank5Aligned Residues443
% Identity19%Templatec2iw3B_
PDB info PDB header:translationChain: B: PDB Molecule:elongation factor 3a; PDBTitle: elongation factor 3 in complex with adp
Resolution2.4 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   12.......20.........30.........40.........50.........60.........70.........80.........90.
Predicted Secondary structure 































Query SS confidence 















































































Query Sequence  LCARSVYKQYSGVNVLKGIDFTLHQGEVHALLGGNGAGKSTLMKIIAGITPADSGTLEIEGNNYVRLTPVHAHQLGIYLV
Query Conservation 
    

        
  


 
  

   


 








  
 
      
 
   
               
  
Alig confidence 





























































..............



Template Conservation 
              
      
  
    
 
  
 




   
                ..............    
Template Sequence  LCNCEFSLAYGAKILLNKTQLRLKRARRYGICGPNGCGKSTLXRAIANGQVDGFPTQEECRT. . . . . . . . . . . . . . VYVE
Template Known Secondary structure  TTTT

STTSSTT
STT


TTTS
..............TT
Template Predicted Secondary structure 

























..............
Template SS confidence 















































































   430.........440.........450.........460.........470.........480.........490. ....
 
   92.......100.........110.........120.........130... ......140.........150.........160.........170
Predicted Secondary structure 




















.

















Query SS confidence 









































.




































Query Sequence  PQEPLLFPSLSIKENILFGLAKKQLSMQKMKNLLAALGCQFD. LHSLAGSLDVADRQMVEILRGLMRDSRILILDEPTAS
Query Conservation   
        

 
 
                 
   
    .
      




  

 

 

   
 







  
Alig confidence 


















...



















.




































Template Conservation                     ...                            



  
   



      

 




  
Template Sequence  HDIDGTHSDTSVLDFVFES. . . GVGTKEAIKDKLIEFGFTDEXIAXPISALSGGWKXKLALARAVLRNADILLLDEPTNH
Template Known Secondary structure 






TTSBTT...

S
T

SBGGG

TT
SSTTTT
Template Predicted Secondary structure 












...




















Template SS confidence 















































































   496...500.........510.... .....520.........530.........540.........550.........560.........570..
 
   171........180.........190.........200.........210.........220 .........230.........240.........
Predicted Secondary structure 











.















Query SS confidence 

















































.




























Query Sequence  LTPAETERLFSRLQELLATGVGIVFISHKLPEIRQIADRISVMRDGTIAL. SGKTSELSTDDIIQAITPAVREKSLSASQ
Query Conservation 

      
   
  
   
 


 


    
    


  
  
 
  .                             
Alig confidence 















...






























.









...















Template Conservation 

      
   
   ...  
 
 
 

   
  
   
  
    
    
        ...                
Template Sequence  LDTVNVAWLVNYLNTC. . . GITSITISHDSVFLDNVCEYIINYEGLKLRKYKGNFTEFVKK. . . CPAAKAYEELSNTDLE
Template Known Secondary structure 

S...
S
S

STTS
...
GGGGGTT
SSGGGG
Template Predicted Secondary structure 


...











...
Template SS confidence 















































































   573......580........ .590.........600.........610.........620.........630 .........640......
 
   250.........260.........270........ .280.........290.........300.........310.........320..
Predicted Secondary structure 






















.......
























Query SS confidence 




























. . . . . . .











































Query Sequence  KLWLELPGNRPQHAAGTPVLTLENLTGEG. . . . . . . FRNVSLTLNAGEILGLAGLVGAGRTELAETLYGLRTLRGGRIML
Query Conservation                     
         .......
  


 
  

   
 
 








  
 
      
 
  
Alig confidence 




























.......











































Template Conservation                     
   
    
       
  

  
  

 
 


 







 
 
 
      
 
  
Template Sequence  FKFPEPGYLEGVKTKQKAIVKVTNXEFQYPGTSKPQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPTSGEVYT
Template Known Secondary structure 








TT

STTS
S

TT
SS
S
TT
SS

TTSS

S
Template Predicted Secondary structure 









































Template SS confidence 















































































   647..650.........660.........670.........680.........690.........700.........710.........720......
 
   323......330.......
Predicted Secondary structure 






.................................................................
Query SS confidence 














. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Query Sequence  NGKEINKLSTGERLL. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Query Conservation   
             .................................................................
Alig confidence 














.................................................................
Template Conservation                      
                                                           
Template Sequence  HENCRIAYIKQHAFAHIESHLDKTPSEYIQWRFQTGEDRETXDRANRQINENDAEAXNKIFKIEGTPRRIAGIHSRRKFK
Template Known Secondary structure 
TT


GGG
TTS
TTTSS
TTTTTTTS



SS
SSSTT

TTT
Template Predicted Secondary structure 











































Template SS confidence 















































































   727..730.........740.........750.........760.........770.........780.........790.........800......
 
   338.340.........350.........360.........370.........380.........390
Predicted Secondary structure  ...........................























Query SS confidence  . . . . . . . . . . . . . . . . . . . . . . . . . . .




















































Query Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . RGLVYLPEDRQSSGLNLDASLAWNVCALTHNLRGFWAKTAKDNATLERYRRAL
Query Conservation  ...........................  
    
      
    

   
                            
Alig confidence  ...........................








.....






































Template Conservation                                      .....                               
   
   
Template Sequence  NTYEYECSFLLGENIGXKSERWVPXXSVDNAWIPRG. . . . . ELVESHSKXVAEVDXKEALASGQFRPLTRKEIEEHCSXL
Template Known Secondary structure  TSSSSTT


GGG
GG.....GTTT





T
Template Predicted Secondary structure 


























.....






















Template SS confidence 















































































   807..810.........820.........830.........840.. .......850.........860.........870.........880.
 
   391...... ..400.........410.........420.........430.........440.........450.........460.........
Predicted Secondary structure 




.




















Query SS confidence 






.







































































Query Sequence  NIKFNQP. EQAARTLSGGNQQKILIAKCLEASPQVLIVDEPTRGVDVSARNDIYQLLRSIAAQNVAVLLISSDLEEIELM
Query Conservation         .      




 


 

 

   
 







  

      
   
  
   
 


 



       
Alig confidence 






.



















































...
















Template Conservation 

            








 




   
 








 

  
   
   
   ...  







   
  
Template Sequence  GLDPEIVSHSRIRGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKEF. . . EGGVIIITHSAEFTKNL
Template Known Secondary structure  T

S
GGGS
TTT

S
GGGT


...SS
S
TTT
Template Predicted Secondary structure 




























...



Template SS confidence 















































































   882.......890.........900.........910.........920.........930.........940. ........950........
 
   470.........480.....
Predicted Secondary structure 




Query SS confidence 















Query Sequence  ADRVYVMHQGEITHSA
Query Conservation 



  
  
 
   
Alig confidence 















Template Conservation   
 
 

  


   
Template Sequence  TEEVWAVKDGRXTPSG
Template Known Secondary structure 


BTTB


Template Predicted Secondary structure 





Template SS confidence 















   959960.........970....
 
Download:Text version FASTA pairwise alignment 3D Model in PDB format

View in Jmol

Send structure to FirstGlance for more viewing options


Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions