Job Description P0A9T8 Confidence 100.00% Date Thu Jan 5 11:11:21 GMT 2012 Rank 59 Aligned Residues 203 % Identity 29% Template c2vf7B_ PDB info PDB header:dna-binding protein Chain: B: PDB Molecule:excinuclease abc, subunit a.; PDBTitle: crystal structure of uvra2 from deinococcus radiodurans Resolution 2.30 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.						.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.
Predicted Secondary structure																																																							.	.	.	.	.
Query SS confidence																																																							.	.	.	.	.
Query Sequence		P	A	E	N	I	V	E	V	H	H	L	K	K	S	V	G	Q	G	E	H	E	L	S	I	L	T	G	V	E	L	V	V	K	R	G	E	T	I	A	L	V	G	E	S	G	S	G	K	S	T	L	L	A	.	.	.	.	.	I	L	A	G	L	D	D	G	S	S	G	E	V	S	L	V	G	Q	P	L	H	N
Query Conservation																																																							.	.	.	.	.
Alig confidence																.	.	.	.	.	.	.	.	.																															.	.	.	.	.																					.	.
Template Conservation																.	.	.	.	.	.	.	.	.																																																								.	.
Template Sequence		E	P	A	G	W	L	E	L	N	G	V	T	R	N	.	.	.	.	.	.	.	.	.	N	L	D	N	L	D	V	R	F	P	L	G	V	M	T	S	V	T	G	V	S	G	S	G	K	S	T	L	V	S	Q	A	L	V	D	A	L	A	A	H	F	G	Q	G	S	A	R	L	G	G	D	L	A	Q	I	.	.
Template Known Secondary structure				S											T	.	.	.	.	.	.	.	.	.	T											S	S							S	T	T	S	S						T	T										S									S	S	G	G	G		.	.
Template Predicted Secondary structure																.	.	.	.	.	.	.	.	.																																																								.	.
Template SS confidence
		498	.	500	.	.	.	.	.	.	.	.	.	510	.										.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.
		77	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.
Predicted Secondary structure																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		M	D	E	E	A	R	A	K	L	R	A	K	H	V	G	F	V	F	Q	S	F	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	T	R	L	V	R	V	D	Q	K	P	I	G	R	T	P	R	S	N	M	A	T	Y	T	G	L	F	D	Q	V	R	K	L	F	A	A	T	P	L	A	K	K	R	G	Y	N	A	G	R	F	S	F	N	V	K	G	G	R	C	E	H	C	Q	G	E	G	W	V	M	V
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.								S	S		S		S	S	T	T								T	T								T	T	S	S	T					S				T	T	S	S		S	S	S	S	S	S	B		S	S	S	T	T
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
													584	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.
																							98	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.			.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.		.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																		.	.																							.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																		.	.																							.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	M	L	I	P	T	L	N	A	L	E	N	V	E	L	P	A	L	.	.	L	R	G	E	S	S	A	E	S	R	N	G	A	K	A	L	L	E	Q	L	G	L	.	G	K	R	L	D	H	L	P	A	Q	L	S	G	G	E	Q	Q
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																		.	.																							.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																		.	.																							.
Template Conservation
Template Sequence		P	S	V	Y	A	P	C	P	V	C	H	G	T	R	Y	N	A	E	T	L	E	V	E	Y	R	G	K	N	I	A	D	V	L	A	L	T	V	D	E	A	H	D	F	F	A	D	E	S	A	I	F	R	A	L	D	T	L	R	E	V	G	L	G	Y	L	R	L	G	Q	P	A	T	E	L	S	G	G	E	A	Q
Template Known Secondary structure									T	T	T	S	S	S		B		T	T	G	G	G			S	S	S								T		B								T	T	T															T		T	T	S	B	T	T			G	G	G			S
Template Predicted Secondary structure
Template SS confidence
		658	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.	.	.	710	.	.	.	.	.	.	.	.	.	720	.	.	.	.	.	.	.	.	.	730	.	.	.	.	.	.	.
		154	.	.	.	.	.	160	.	.	.	.	.	.				.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.							220	.	.	.	.
Predicted Secondary structure															.	.	.																																																						.	.	.	.	.	.
Query SS confidence															.	.	.																																																						.	.	.	.	.	.
Query Sequence		R	V	A	L	A	R	A	F	N	G	R	P	D	.	.	.	V	L	F	A	D	E	P	T	G	N	L	D	R	Q	T	G	D	K	I	A	D	L	L	F	S	L	N	R	E	H	G	T	T	L	I	M	V	T	H	D	L	Q	L	A	A	R	C	D	R	C	L	R	L	.	.	.	.	.	.	V	N	G	Q	L
Query Conservation															.	.	.																																																						.	.	.	.	.	.
Alig confidence															.	.	.																												.																										.	.	.	.	.	.
Template Conservation																																													.
Template Sequence		R	I	K	L	A	T	E	L	R	R	S	G	R	G	G	T	V	Y	V	L	D	E	P	T	T	G	L	H	P	A	D	V	E	R	L	Q	R	Q	L	V	K	L	V	.	D	A	G	N	T	V	I	A	V	E	H	K	M	Q	V	V	A	A	S	D	W	V	L	D	I	G	P	G	A	G	E	D	G	G	R	L
Template Known Secondary structure												S	S	S	S									S		S	S																		.		T	T														T	T		S							S	S	S	G	G	G			S
Template Predicted Secondary structure																																													.
Template SS confidence
		738	.	740	.	.	.	.	.	.	.	.	.	750	.	.	.	.	.	.	.	.	.	760	.	.	.	.	.	.	.	.	.	770	.	.	.	.	.	.	.	.	.	780		.	.	.	.	.	.	.	.	.	790	.	.	.	.	.	.	.	.	.	800	.	.	.	.	.	.	.	.	.	810	.	.	.	.	.	.
		225	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	E	E
Query Conservation
Alig confidence
Template Conservation
Template Sequence		V	A	Q
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		817	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions