Job Description P30864 Confidence 100.00% Date Thu Jan 5 11:46:41 GMT 2012 Rank 2 Aligned Residues 288 % Identity 26% Template c3t1bB_ PDB info PDB header:transcription Chain: B: PDB Molecule:transcriptional regulator, lysr family; PDBTitle: crystal structure of the full-length aphb n100e variant Resolution 2.70 Å

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		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	T	S	E	E	L	A	I	F	V	S	V	V	E	S	G	S	F	S	R	A	A	E	Q	L	G	Q	A	N	S	A	V	S	R	A	V	K	K	L	E	M	K	L	G	V	S	L	L	N	R	T	T	R	Q	L	S	L	T	E	E	G	E	R	Y	F	R	R	V	Q	S	I	L	Q	E	M	A	A	A	E	S
Query Conservation
Alig confidence
Template Conservation
Template Sequence		M	K	L	D	D	L	N	L	F	R	L	V	V	E	N	G	S	Y	T	S	T	S	K	K	T	M	I	P	V	A	T	I	T	R	R	I	Q	A	L	E	D	S	L	N	L	R	L	L	N	R	H	A	R	K	L	T	L	T	E	A	G	E	R	F	Y	K	D	C	S	P	L	L	E	R	L	A	S	M	T	E
Template Known Secondary structure																	S	S																											T								S	S	S
Template Predicted Secondary structure
Template SS confidence
		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
		83	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	I	M	E	T	R	N	T	P	R	G	L	L	R	I	D	A	A	T	P	V	V	L	H	F	L	M	P	L	I	K	P	F	R	E	R	Y	P	E	V	T	L	S	L	V	S	S	E	T	I	I	N	L	I	E	R	K	V	D	V	A	I	R	A	G	T	L	T	D	S	S	L	R	A	R	P	L	F	N	S
Query Conservation
Alig confidence																																																			.
Template Conservation																																																			.
Template Sequence		E	I	T	D	E	C	R	G	A	S	G	R	I	R	I	S	A	P	S	E	L	T	K	R	M	M	M	P	M	F	N	A	F	M	E	K	Y	P	D	I	H	I	E	L	M	M	S	N	Q	.	A	D	L	D	P	T	E	W	D	V	I	F	R	V	G	P	Q	R	D	S	S	L	I	A	R	K	I	G	E	V
Template Known Secondary structure							S			S										T	T	T	T	T	T	T													T	T									S	S	.					S	T	T		S						S							S
Template Predicted Secondary structure																																																			.
Template SS confidence
		81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.		130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.
		163	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Y	R	K	I	I	A	S	P	D	Y	I	S	R	Y	G	K	P	E	T	I	D	D	L	K	Q	H	I	C	L	G	F	T	E	P	A	S	L	N	T	W	P	I	A	R	S	D	G	Q	L	H	E	V	K	Y	G	L	S	S	N	S	G	E	T	L	K	Q	L	C	L	S	G	N	G	I	A	C	L	S	D	Y
Query Conservation
Alig confidence																																									.
Template Conservation																																									.
Template Sequence		K	D	I	L	V	A	S	P	Q	Y	L	S	S	H	P	Q	P	T	H	A	E	E	L	H	Q	H	Q	L	L	K	G	Y	P	L	L	K	W	Q	L	.	T	N	S	Q	G	E	T	V	V	N	S	D	R	G	R	F	Q	A	S	A	L	N	V	V	R	S	A	C	S	E	G	L	G	I	T	L	M	P	D	V
Template Known Secondary structure															S				S	S	G	G	G	G	G	G	S						T	T			S				.			T	T	S										S				S	S										T	T								G	G
Template Predicted Secondary structure																																									.
Template SS confidence
		161	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.		200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.
		243	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		M	I	D	K	E	I	A	R	G	E	L	V	E	L	M	A	D	K	V	L	P	V	E	M	P	F	S	A	V	Y	Y	S	D	R	A	V	S	T	R	I	R	A	F	I	D	F	L	S	E	H	V
Query Conservation
Alig confidence																							.
Template Conservation																							.
Template Sequence		M	L	R	E	F	L	E	D	G	S	L	V	Q	V	L	S	D	W	S	S	N	.	P	R	D	I	Y	M	L	Y	N	H	K	D	H	Q	P	E	K	V	R	L	F	I	D	F	V	I	G	Y	H
Template Known Secondary structure		G	T							T	S	S					T	T		B			.												S	S															S
Template Predicted Secondary structure																							.
Template SS confidence
		240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260		.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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