Job Description P30864 Confidence 99.03% Date Thu Jan 5 11:46:41 GMT 2012 Rank 37 Aligned Residues 179 % Identity 16% Template c3onmB_ PDB info PDB header:transcription Chain: B: PDB Molecule:transcriptional regulator lrha; PDBTitle: effector binding domain of lysr-type transcription factor rovm from y.2 pseudotuberculosis Resolution 2.40 Å

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		94	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.
Predicted Secondary structure																													.
Query SS confidence																													.
Query Sequence		L	L	R	I	D	A	A	T	P	V	V	L	H	F	L	M	P	L	I	K	P	F	R	E	R	Y	P	.	E	V	T	L	S	L	V	S	S	E	T	I	I	N	L	I	E	R	K	V	D	V	A	I	R	A	G	T	L	T	D	S	S	L	R	A	R	P	L	F	N	S	Y	R	K	I	I	A	S	P	D	Y
Query Conservation																													.
Alig confidence																													.																														.
Template Conservation																																																											.
Template Sequence		S	L	I	I	G	A	S	D	D	T	A	D	T	L	L	P	F	L	L	N	R	V	A	T	L	Y	P	L	A	I	D	V	R	V	K	R	S	P	F	I	A	D	M	L	S	S	G	E	V	D	L	A	I	T	T	A	K	.	V	D	S	H	P	H	V	I	L	R	T	S	P	T	L	W	Y	C	S	V	D	Y
Template Known Secondary structure													T	T	T									T	T	S												G	G	G							T	T	S		S					S	S		.		S	S	S																T	T
Template Predicted Secondary structure																																																											.
Template SS confidence
		100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.		.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.
		173	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	S	R	Y	G	K	P	E	T	I	D	D	L	K	Q	H	I	C	L	G	F	T	E	P	A	S	L	N	T	W	P	I	A	R	S	D	G	Q	L	H	E	V	K	Y	G	L	S	S	N	S	G	E	T	L	K	Q	L	C	L	S	G	N	G	I	A	C	L	S	D	Y	M	I	D	K	E	I	A	R	G	E
Query Conservation
Alig confidence										.	.	.	.	.	.	.	.
Template Conservation										.	.	.	.	.	.	.	.
Template Sequence		Q	F	Q	P	G	E	P	V	.	.	.	.	.	.	.	.	P	L	V	V	M	D	E	P	S	L	Y	R	E	M	A	I	E	H	L	T	Q	A	G	V	P	W	R	I	A	Y	V	A	S	S	L	S	A	I	R	A	A	V	R	A	G	L	G	V	T	A	R	P	I	E	M	M	S	P	D	L	R	V	L	G
Template Known Secondary structure					S	S	S			.	.	.	.	.	.	.	.						S	S	S														T	T										S	S										T	T	S		B					G	G	G			T	T
Template Predicted Secondary structure										.	.	.	.	.	.	.	.
Template SS confidence
		180	.	.	.	.	.	.	.									.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.
		253	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	V	E	L	M	A	D	K	V	L	P	V	E	M	P	F	S	A	V	Y	Y	S	D	R	A	V	S	T	R	I	R	A	F
Query Conservation
Alig confidence											.	.	.												.
Template Conservation											.	.	.												.
Template Sequence		E	T	E	G	L	P	G	L	P	.	.	.	E	T	R	Y	V	L	C	K	D	K	Q	.	C	D	N	E	L	A	L	A	I
Template Known Secondary structure		G	G	G	T						.	.	.										S		.
Template Predicted Secondary structure											.	.	.												.
Template SS confidence
		252	.	.	.	.	.	.	.	260				.	.	.	.	.	.	.	.	.	270	.		.	.	.	.	.	.	.	.	280

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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