Job Description P30864 Confidence 99.45% Date Thu Jan 5 11:46:41 GMT 2012 Rank 35 Aligned Residues 208 % Identity 14% Template c2f78A_ PDB info PDB header:gene regulation Chain: A: PDB Molecule:hth-type transcriptional regulator benm; PDBTitle: benm effector binding domain with its effector benzoate Resolution 2.05 Å

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		90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.				.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.
Predicted Secondary structure																																												.	.	.
Query SS confidence																																												.	.	.
Query Sequence		T	P	R	G	L	L	R	I	D	A	A	T	P	V	V	L	H	F	L	M	P	L	I	K	P	F	R	E	R	Y	P	E	V	T	L	S	L	V	S	S	E	T	.	.	.	I	I	N	L	I	E	R	K	V	D	V	A	I	R	A	G	T	L	T	D	S	S	L	R	A	R	P	L	F	N	S	Y	R	K	I
Query Conservation																																												.	.	.
Alig confidence																																												.	.	.
Template Conservation
Template Sequence		S	V	E	K	T	I	R	I	G	F	V	G	S	L	L	F	G	L	L	P	R	I	I	H	L	Y	R	Q	A	H	P	N	L	R	I	E	L	Y	E	M	G	T	K	A	Q	T	E	A	L	K	E	G	R	I	D	A	G	F	G	R	L	K	I	S	D	P	A	I	K	R	T	L	L	R	N	E	R	L	M	V
Template Known Secondary structure				S									G	G	G	G	G	T	T													T	T																				T	S		S					S						T	T
Template Predicted Secondary structure
Template SS confidence
		87	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.
		167	.	.	170	.	.	.	.	.	.	.	.	.			180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.			.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.
Predicted Secondary structure															.	.																			.	.
Query SS confidence															.	.																			.	.
Query Sequence		I	A	S	P	D	Y	I	S	R	Y	G	K	P	.	.	E	T	I	D	D	L	K	Q	H	I	C	L	G	F	T	E	P	A	.	.	S	L	N	T	W	P	I	A	R	S	D	G	Q	L	H	E	V	K	Y	G	L	S	S	N	S	G	E	T	L	K	Q	L	C	L	S	G	N	G	I	A	C	L	S	D	Y
Query Conservation															.	.																			.	.
Alig confidence															.	.																			.	.
Template Conservation
Template Sequence		A	V	H	A	S	H	P	L	N	Q	M	K	D	K	G	V	H	L	N	D	L	I	D	E	K	I	L	L	Y	P	S	S	P	K	P	N	F	S	T	H	V	M	N	I	F	S	D	H	G	L	E	P	T	K	I	N	E	V	R	E	V	Q	L	A	L	G	L	V	A	A	G	E	G	I	S	L	V	P	A	S
Template Known Secondary structure					T	T	S	G	G	G	G	G	T	T	T		B		G	G	G	S	T	T	S								S	S	S	S	S											T	T	T				S	S					S	S											T	S		B					G	G
Template Predicted Secondary structure
Template SS confidence
		167	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.
		243	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.
Predicted Secondary structure
Query SS confidence
Query Sequence		M	I	D	K	E	I	A	R	G	E	L	V	E	L	M	A	D	K	V	L	P	V	E	M	P	F	S	A	V	Y	Y	S	D	R	A	V	S	T	R	I	R	A	F	I	D	F	L	S	E	H	V	K	T	A	P	G	G	A	V
Query Conservation
Alig confidence																.	.	.																	.
Template Conservation																.	.	.																	.
Template Sequence		T	Q	S	I	Q	L	F	N	L	S	Y	V	P	L	.	.	.	L	D	P	D	A	I	T	P	I	Y	I	A	V	R	N	M	.	E	E	S	T	Y	I	Y	S	L	Y	E	T	I	R	Q	I	Y	A	Y	E	G	F	T	E	P
Template Known Secondary structure		G	G	G				T	T						B	.	.	.			T	T											S	S	.																				T	T
Template Predicted Secondary structure																.	.	.																	.
Template SS confidence
		247	.	.	250	.	.	.	.	.	.	.	.	.	260				.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.		.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions