 |
Job Description | P09130 | Confidence | 93.89% | Date | Thu Jan 5 11:01:56 GMT 2012 |
Rank | 407 | Aligned Residues | 53 |
% Identity | 17% | Template | c3l0oB_ |
PDB info |
PDB header:hydrolase | Chain: B: PDB Molecule:transcription termination factor rho; |
PDBTitle: structure of rna-free rho transcription termination factor from2 thermotoga maritima
|
Resolution | 2.35 Å |
|
  |   |
186 | . | . | . | 190 | . | . | . | . | . | . | . | . | . | 200 | . | . | . | . | . | . | . | . | . | 210 | . | . | |
|
|
|
. | . | . | . | . | . | . | 220 | . | . | . | . | . | . | . | . | . | 230 | . | . | . | . | . | . | . | . |
Predicted Secondary structure |   |
|  |  |  |  |  |
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |
| . | . | . | . |
|
|
|  |  |  |  |
|
|
|  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
Q | N | F | C | L | H | G | T | V | G | A | G | K | S | E | V | I | R | R | L | A | N | Y | A | R | Q | R | . |
. |
. |
. |
G | D | M | V | V | I | Y | D | R | S | G | E | F | V | K | S | Y | Y | D | P | S | I | D | K | I | L |
Query Conservation |   |
  |
|   |
|
|
|
|   |
|
|
|
|
|
|   |   |
|   |   |
|
|   |   |   |   |   |   | . | . | . | . |
|   |   |   |
|
|   |
|
|
|
|
|   |   |   |   |   |   |   |   |   |   |   |   |
|   |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
|
|   |   |
|   |
|   |   |
|   |
|
|
|   |
|
|   |   |
|
|   |   |
|   |   |   |   |   |   |   |   |   |
|   |   |
|
|
|
|
|   |   |
|
|   |
|   |   |   |   |   |   |   |   |
|
|
Template Sequence |   |
Q | R | G | M | I | V | A | P | P | K | A | G | K | T | T | I | L | K | E | I | A | N | G | I | A | E | N | H | P | D | T | I | R | I | I | L | L | I | D | E | R | P | E | E | V | T | D | I | R | E | S | T | N | A | I | V | I |
Template Known Secondary structure |   |
|  |  |  |  |  |  |
| T | T | S | S |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
| T | T | S |  |  |  |  |  |  |  |  |  |
|  |  |  |  |  |  |  |  | T | T | S |
| S |  |  |  |
Template Predicted Secondary structure |   |
|  |  |  |  |  |
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |  |  |  |  |  |  |
|  |  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
176 | . | . | . | 180 | . | . | . | . | . | . | . | . | . | 190 | . | . | . | . | . | . | . | . | . | 200 | . | . | . | . | . | . | . | . | . | 210 | . | . | . | . | . | . | . | . | . | 220 | . | . | . | . | . | . | . | . | . | 230 | . | . |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|