Job Description P09130 Confidence 99.29% Date Thu Jan 5 11:01:56 GMT 2012 Rank 2 Aligned Residues 205 % Identity 15% Template c2iutA_ PDB info PDB header:membrane protein Chain: A: PDB Molecule:dna translocase ftsk; PDBTitle: p. aeruginosa ftsk motor domain, dimeric Resolution 2.25 Å

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		175	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.					.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250
Predicted Secondary structure																																										.	.	.	.
Query SS confidence																																										.	.	.	.
Query Sequence		G	D	L	P	I	I	R	D	S	E	I	Q	N	F	C	L	H	G	T	V	G	A	G	K	S	E	V	I	R	R	L	A	N	Y	A	R	Q	R	G	D	.	.	.	.	M	V	V	I	Y	D	R	S	G	E	F	V	K	S	Y	Y	D	P	S	I	D	K	I	L	N	P	L	D	A	R	C	A	A	W	D	L
Query Conservation																																										.	.	.	.
Alig confidence																																										.	.	.	.												.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																									.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		G	R	P	I	I	T	D	L	A	K	M	P	H	L	L	V	A	G	T	T	G	S	G	K	S	V	G	V	N	A	M	L	L	S	I	L	F	K	S	T	P	S	E	A	R	L	I	M	I	D	P	K	M	L	E	.	.	.	.	.	.	.	.	.	.	.	.	L	S	I	Y	E	G	I	P	H	L	L	C	P
Template Known Secondary structure		S							G	G	G	S									T	T	S	S														T	T			T	T	T								S	S	S			.	.	.	.	.	.	.	.	.	.	.	.			T	T	T	T		T	T	B	S	S	S
Template Predicted Secondary structure																																																									.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		449	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.													.	.	.	.	.	.	510	.	.	.	.	.	.
		251	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330
Predicted Secondary structure
Query SS confidence
Query Sequence		W	K	E	C	L	T	Q	P	D	F	D	N	T	A	N	T	L	I	P	M	G	T	K	E	D	P	F	W	Q	G	S	G	R	T	I	F	A	E	A	A	Y	L	M	R	N	D	P	N	R	S	Y	S	K	L	V	D	T	L	L	S	I	K	I	E	K	L	R	T	Y	L	R	N	S	P	A	A	N	L	V	E
Query Conservation
Alig confidence			.	.																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation			.	.																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		V	.	.	V	T	D	M	K	E	A	A	N	A	L	R	W	S	V	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	E	M	E	R	R	Y	R	L	M	A	A	M	G	V	R	N	L	A	G	F	N	R	K	V	K	D	A	E	E	A	G	T	P	L	T	D	P	L	F	R	R	E	S	P	D	D
Template Known Secondary structure			.	.	B															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.														T		S	S														T	T				B		T	T					S	T	T
Template Predicted Secondary structure			.	.																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		517			.	.	520	.	.	.	.	.	.	.	.	.	530	.	.																.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.
		331	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410
Predicted Secondary structure
Query SS confidence
Query Sequence		E	K	I	E	K	T	A	I	S	I	R	A	V	L	T	N	Y	V	K	A	I	R	Y	L	Q	G	I	E	H	N	G	E	P	F	T	I	R	D	W	M	R	G	V	R	E	D	Q	K	N	G	W	L	F	I	S	S	N	A	D	T	H	A	S	L	K	P	V	I	S	M	W	L	S	I	A	I	R	G	L	L
Query Conservation
Alig confidence			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		E	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		580
		411	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.							.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.
Predicted Secondary structure																									.	.	.	.	.	.
Query SS confidence																									.	.	.	.	.	.
Query Sequence		A	M	G	E	N	R	N	R	R	V	W	F	F	C	D	E	L	P	T	L	H	K	L	.	.	.	.	.	.	P	D	L	V	E	I	L	P	E	A	R	K	F	G	G	C	Y	V	F	G	I	Q	S	Y	A	Q	L	E	D	I	Y	G	E	K	A	A	A	S	L	F	D	V	M	N	T	R	A	F	F	R	S
Query Conservation																									.	.	.	.	.	.
Alig confidence																									.	.	.	.	.	.																											.	.	.	.	.	.
Template Conservation																																																									.	.	.	.	.	.
Template Sequence		P	P	Q	L	S	T	L	P	T	I	V	V	V	V	D	E	F	A	D	M	M	M	I	V	G	K	K	V	E	E	L	I	A	R	I	A	Q	K	A	R	A	A	G	I	H	L	I	L	A	T	Q	R	P	S	V	.	.	.	.	.	.	D	V	I	T	G	L	I	K	A	N	I	P	T	R	I	A	F	Q	V
Template Known Secondary structure				B												S			T	T					T																T	T	T	T								S				T	.	.	.	.	.	.	T	T	S							T
Template Predicted Secondary structure																																																									.	.	.	.	.	.
Template SS confidence
		581	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.							.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.
		485	.	.	.	.	490	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	S	H	K	I	A	E	F	A
Query Conservation
Alig confidence
Template Conservation
Template Sequence		S	S	K	I	D	S	R	T	I
Template Known Secondary structure		S
Template Predicted Secondary structure
Template SS confidence
		655	.	.	.	.	660	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions