 |
Job Description | P77775 | Confidence | 96.72% | Date | Thu Jan 5 12:32:44 GMT 2012 |
Rank | 428 | Aligned Residues | 65 |
% Identity | 18% | Template | c2g5cD_ |
PDB info |
PDB header:oxidoreductase | Chain: D: PDB Molecule:prephenate dehydrogenase; |
PDBTitle: crystal structure of prephenate dehydrogenase from aquifex aeolicus
|
Resolution | 1.90 Å |
|
 |
  |   |
2 | . | . | . | . | . | . | . | 10 | . | . | . | . | . | . | . | . | . | 20 | . | . | . | . | . | |
|
. | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . |
Predicted Secondary structure |   |
 |  |  |  |  |
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |
|
|
| . | . |  |  |  |  |  |  |
|
|
|
|
|
|
|
|
|
|
|
|
|  |  |  |  |
|  |  |  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
N | I | V | I | T | G | G | T | G | L | I | G | R | H | L | I | P | R | L | L | E | L | G | H | . |
. |
Q | I | T | V | V | T | R | N | P | Q | K | A | S | S | V | L | G | P | R | V | T | L | W | Q | G | L | A | D | Q | S | N | L | N | G | V | D | A | V | I | N | L | A |
Query Conservation |   |
|
|
|
|
|
|
|
|
|   |
|
|   |   |
|   |   |   |
|   |   |   |
|   | . | . |   |
|   |   |   |   |
|   |   |   |   |   |   |   |   |   |   |   |   |   |
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
Alig confidence |   |
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
|
|   |
|
|
|   | . |
|   |
|
|   |   |
|
|   |   |
|   |   |   |
|   |   |   |   |
|   |   |   |
|
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|
|
|
|
|
|
Template Sequence |   |
N | V | L | I | V | G | V | . |
G | F | X | G | G | S | F | A | K | S | L | R | R | S | G | F | K | G | K | I | Y | G | Y | D | I | N | P | E | S | I | S | K | A | V | D | L | G | I | I | D | E | G | T | T | S | I | A | K | V | E | D | F | S | P | D | F | V | X | L | S |
Template Known Secondary structure |   |
 |  |  |  |  | S |
| . | S |  |  |  |  |  |  |  |  |  |  |  |  | T | T |
|
| S |  |  |  |  |  |
| S |
|  |  |  |  |  |  |  |  |  | T | T | S |
| S |  |  |  | S |
| G | G | G | G | G | G | G |
|
| S |  |  |  |  |
|
Template Predicted Secondary structure |   |
 |  |  |  |  |
|
| . |
|  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |  |
|
|  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |
|
|
|
|
|
|
|
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
32 | . | . | . | . | . | . | |
. | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|