Job Description P0A7B8 Confidence 99.98% Date Thu Jan 5 11:05:18 GMT 2012 Rank 45 Aligned Residues 161 % Identity 17% Template c1q5rD_ PDB info PDB header:hydrolase Chain: D: PDB Molecule:proteasome alpha-type subunit 1; PDBTitle: the rhodococcus 20s proteasome with unprocessed pro-peptides Resolution 3.10 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.				.	.	.
Predicted Secondary structure																																																																												.	.	.
Query SS confidence																																																																												.	.	.
Query Sequence		T	T	I	V	S	V	R	R	N	G	H	V	V	I	A	G	D	G	Q	A	T	L	G	N	T	V	M	K	G	N	V	K	K	V	R	R	L	Y	N	D	K	V	I	A	G	F	A	G	G	T	A	D	A	F	T	L	F	E	L	F	E	R	K	L	E	M	H	Q	G	H	L	V	K	A	.	.	.	A	V	E
Query Conservation																																																																												.	.	.
Alig confidence																					.	.	.	.	.	.	.	.											.																																					.	.	.
Template Conservation																					.	.	.	.	.	.	.	.											.
Template Sequence		R	S	V	V	V	L	T	F	R	D	G	V	L	F	V	A	E	N	P	.	.	.	.	.	.	.	.	S	T	A	L	H	K	V	S	E	L	.	Y	D	R	L	G	F	A	A	V	G	K	Y	N	E	F	E	N	L	R	R	A	G	I	V	H	A	D	M	R	G	Y	S	Y	D	R	R	D	V	T	G	R	S
Template Known Secondary structure										S	S									S	.	.	.	.	.	.	.	.		S	S	S		S					.	S	S	S																														S		G	G	G
Template Predicted Secondary structure																					.	.	.	.	.	.	.	.											.
Template SS confidence
		28	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.									.	.	.	50	.	.	.	.	.	.		.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.
		79	80	.	.	.	.	.	.	.							.	.	90	.	.	.	.	.	.	.	.	.	100	.									.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.			.	140	.	.
Predicted Secondary structure											.	.	.	.	.	.															.	.	.	.	.	.	.	.																																						.	.
Query SS confidence											.	.	.	.	.	.															.	.	.	.	.	.	.	.																																						.	.
Query Sequence		L	A	K	D	W	R	T	D	R	.	.	.	.	.	.	M	L	R	K	L	E	A	L	L	A	V	A	D	E	.	.	.	.	.	.	.	.	T	A	S	L	I	I	T	G	N	G	D	V	V	Q	P	E	N	D	L	I	A	I	G	S	G	G	P	Y	A	Q	A	A	A	R	A	L	L	.	.	E	N	T	E
Query Conservation											.	.	.	.	.	.															.	.	.	.	.	.	.	.																																						.	.
Alig confidence											.	.	.	.	.	.															.	.	.	.	.	.	.	.																	.																					.	.
Template Conservation																																																							.
Template Sequence		L	A	N	A	Y	A	Q	T	L	G	T	I	F	T	E	Q	P	K	P	Y	E	V	E	I	C	V	A	E	V	G	R	V	G	S	P	K	A	P	Q	L	Y	R	I	T	Y	D	G	S	I	V	D	E	Q	.	H	F	V	V	M	G	G	T	T	E	P	I	A	T	A	M	R	E	S	Y	R	A	D	L	D	L
Template Known Secondary structure																	S	S	S														S	S												T	T	S						S	.	S					S	S											T	T			T	T
Template Predicted Secondary structure																																																							.
Template SS confidence
		99	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.		.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.
		143	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	S	A	R	E	I	A	E	K	A	L	D	I	A	G	D	I	C	I	Y	T	N	H	F	H	T	I	E	E	L	S	Y	K	A
Query Conservation
Alig confidence														.	.	.	.
Template Conservation														.	.	.	.
Template Sequence		E	A	A	V	G	I	A	V	N	A	L	R	.	.	.	.	Q	G	G	V	D	V	A	S	L	E	V	A	V	L	D	Q	S	R
Template Known Secondary structure														.	.	.	.	S					S	S									T	T	S
Template Predicted Secondary structure														.	.	.	.
Template SS confidence
		178	.	180	.	.	.	.	.	.	.	.	.					190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions