 |
Job Description | P39838 | Confidence | 99.15% | Date | Thu Jan 5 12:01:06 GMT 2012 |
Rank | 133 | Aligned Residues | 95 |
% Identity | 12% | Template | c3snkA_ |
PDB info |
PDB header:signaling protein | Chain: A: PDB Molecule:response regulator chey-like protein; |
PDBTitle: crystal structure of a response regulator chey-like protein (mll6475)2 from mesorhizobium loti at 2.02 a resolution
|
Resolution | 2.02 Å |
|
 |
  |   |
692 | . | . | . | . | . | . | . | 700 | . | . | . | . | . | . | . | . | . | 710 | . | . | . | . | . | . | . | . | |
. | 720 | . | . | . | . | . | . | . | . | . | |
|
|
|
|
|
730 | . | . | . | . | . | . | . | . | . | 740 | . | . | . | . | . | |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
. | . | . | . |
Predicted Secondary structure |   |
|
|
|  |  |  |  |  |  |
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
| . |  |  |  |  |  |
|
|
|
|
|
| . | . | . | . | . | . |
|
|
|
|  |  |  |  |
|
|
|
|
|
|
|
| . | . | . | . | . | . | . | . | . | . | . | . | . | . | . |
|  |  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
. |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
|
|
|
|
Query Sequence |   |
D | D | V | C | V | M | V | D | V | T | S | A | E | I | R | N | I | V | T | R | Q | L | E | N | W | G | A | . |
T | C | I | T | P | D | E | R | L | I | S | . |
. |
. |
. |
. |
. |
Q | D | Y | D | I | F | L | T | D | N | P | S | N | L | T | A | . |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
S | G | L | L |
Query Conservation |   |
  |   |   |   |   |
|   |   |   |
|   |   |   |   |   |   |   |   |   |   |   |
|   |   |   |
|   | . |   |   |   |   |
|   |   |   |   |   |   | . | . | . | . | . | . |   |   |   |
|   |
|
|   |
|   |   |
|   |   |   |   | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . |   |
|   |   |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . | . | . | . | . | . | . | . | . | . |
|
|
|
|
Template Conservation |   |
|   |   |
|
|
|
|
|
|
|
|   |   |   |   |   |   |
|   |   |   |
|   |   |   |   |   |   |   |
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|
|
|
|   |
|   |   |
|   |   |   |   |
|   |   |   |   |   |   |
|   |   |   |   |   |   |   |
|
|
|   |
Template Sequence |   |
K | R | K | Q | V | A | L | F | S | S | D | P | N | F | K | R | D | V | A | T | R | L | D | A | L | A | I | Y | D | V | R | V | S | E | T | D | D | F | L | K | G | P | P | A | D | T | R | P | G | I | V | I | L | D | L | G | G | G | D | L | L | G | K | P | G | I | V | E | A | R | A | L | W | A | T | V | P | L | I | A |
Template Known Secondary structure |   |
|
|  |  |  |  |  |  |
| S |
|  |  |  |  |  |  |  |  |  |  |  |  |  | T | S | S |  |  |  |  |  |  |
| G | G | G | G | G | G |
|
|
| T | T |
|
|
| S |  |  |  |  |  |  |  | T | T | G | G | G | G | S | T | T |  |  |  |  |  | G | G | G | T | T |
|
|  |  |  |
Template Predicted Secondary structure |   |
|
|
|  |  |  |  |  |  |
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |  |  |  |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
12 | . | . | . | . | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . | . | . | . | . | . | . | . | 90 | . |
  |
  |   |
750 | . | . | . | . | . | . | . | . | . | 760 | . | . | . | . | . | . | . | . | . | 770 | . | . | . | . | . | |
. | . | . | . | 780 | . | . | . | . | . | . |
Predicted Secondary structure |   |
 |  |  |
|
|
|
|
|
|  |  |  |  |  |  |
|
|
|
|
|
|
|  |  |  |  | . |  |  |  |  |  |  |  |  |  |  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
L | S | D | D | E | S | G | V | R | E | I | G | P | G | Q | L | C | V | N | F | N | M | S | N | A | M | . |
Q | E | A | V | L | Q | L | I | E | V | Q |
Query Conservation |   |
  |
|
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|   |   | . |   |   |   |   |   |   |   |   |   |   |   |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
|
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|
|   |
|   |
|   |
|
|   |   |   |   |
|
|   |   |   |
|   |   |   |
Template Sequence |   |
V | S | D | E | L | T | S | E | Q | T | R | V | L | V | R | X | N | A | S | D | W | L | H | K | P | L | D | G | K | E | L | L | N | A | V | T | F | H |
Template Known Secondary structure |   |
 |  | S |
|
|
|  |  |  |  |  |  |  |  |  | T | T |
| S |  |  |  |  | S | S |
|
|  |  |  |  |  |  |  |  |  |  | T |
Template Predicted Secondary structure |   |
|
|
|
|
|
|
|
|
|
|
|  |  |  |  |
|
|
|
|
|  |  |  |
|
|
|
|  |  |  |  |  |  |  |  |  |  |
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
92 | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120 | . | . | . | . | . | . | . | . | . |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|