Job Description P39838 Confidence 92.49% Date Thu Jan 5 12:01:06 GMT 2012 Rank 221 Aligned Residues 86 % Identity 16% Template c3lyxA_ PDB info PDB header:transcription Chain: A: PDB Molecule:sensory box/ggdef domain protein; PDBTitle: crystal structure of the pas domain of the protein cps_12912 from colwellia psychrerythraea. northeast structural3 genomics consortium target id csr222b Resolution 2.00 Å

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		355	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.											.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420
Predicted Secondary structure																																													.	.	.	.	.	.	.	.	.	.																								.	.	.	.
Query SS confidence																																													.	.	.	.	.	.	.	.	.	.																								.	.	.	.
Query Sequence		A	I	N	E	E	I	V	S	L	L	P	L	G	L	L	V	H	D	Q	E	S	N	R	T	V	I	S	N	K	I	A	D	H	L	L	P	H	L	N	L	Q	N	I	.	.	.	.	.	.	.	.	.	.	T	T	M	A	E	Q	H	Q	G	I	I	Q	A	T	I	N	N	E	L	Y	E	I	R	.	.	.	.
Query Conservation																																													.	.	.	.	.	.	.	.	.	.																								.	.	.	.
Alig confidence																						.																							.	.	.	.	.	.	.	.	.	.																								.	.	.	.
Template Conservation																						.
Template Sequence		K	Q	R	A	K	A	F	D	Y	V	F	D	A	I	V	V	T	D	L	Q	.	G	F	I	I	D	W	N	K	G	S	E	T	L	Y	G	Y	S	K	E	Q	A	I	G	Q	P	V	N	M	L	H	V	P	G	D	T	E	H	I	T	S	E	V	I	S	A	V	E	N	Q	G	K	W	T	G	E	I	R	M	L
Template Known Secondary structure							G	G	G	T		S	S							T	T	.		B																				T	T	S	B	G	G	G	G	S		T	T	T															T	S
Template Predicted Secondary structure																						.
Template SS confidence
		7	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.		.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.
																	421	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	M	F	R	S	Q	V	A	P	R	T	Q	I	F	I	I	R	D	Q	D	R	E
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		H	K	D	G	H	I	G	W	I	E	S	M	C	V	P	I	Y	G	E	N	Y	Q	M	V	G	A	L	G	I	N	R	D	I	T	K	R
Template Known Secondary structure			T	T	S															S	T	T													S
Template Predicted Secondary structure
Template SS confidence
		86	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions