Job Description P39838 Confidence 92.80% Date Thu Jan 5 12:01:06 GMT 2012 Rank 220 Aligned Residues 240 % Identity 13% Template c3lifA_ PDB info PDB header:signaling protein Chain: A: PDB Molecule:putative diguanylate cyclase (ggdef) with pas/pac domain; PDBTitle: crystal structure of the extracellular domain of the putative2 histidine kinase rphk1s-z16 Resolution 2.70 Å

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		41	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Predicted Secondary structure
Query SS confidence
Query Sequence		A	V	N	A	W	L	K	D	K	S	Y	Q	I	V	D	I	T	H	A	I	Q	K	R	V	D	N	W	R	Y	V	T	W	Q	I	Y	D	N	I	A	A	T	T	S	P	S	S	G	E	G	L	Q	E	T	R	L	K	Q	D	V	Y	Y	L	E	K	P	R	R	K	T	E	A	L	I	F	G	S	H	D	N	S
Query Conservation
Alig confidence																																															.	.	.
Template Conservation																																															.	.	.
Template Sequence		S	H	K	I	A	L	A	Q	S	E	T	E	X	R	N	L	S	H	S	L	A	E	H	A	T	H	T	F	Q	G	A	D	V	V	L	D	D	I	V	S	F	X	K	W	R	.	.	.	P	H	P	S	P	V	F	N	E	R	L	R	A	L	A	D	N	L	P	Q	L	S	D	V	A	I	L	D	A	D	G	Q
Template Known Secondary structure																																													T		.	.	.	S	S			T														T	T									T	T	S	B
Template Predicted Secondary structure																																															.	.	.
Template SS confidence
		44	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.				.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
		121	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200
Predicted Secondary structure
Query SS confidence
Query Sequence		T	L	E	M	T	Q	R	M	S	T	Y	L	D	T	L	W	G	A	E	N	V	P	W	S	M	Y	Y	L	N	G	Q	D	N	S	L	V	L	I	S	T	L	P	L	K	D	L	T	S	G	F	K	E	S	T	V	S	D	I	V	D	S	R	R	A	E	M	L	Q	Q	A	N	A	L	D	E	R	E	S	F	S
Query Conservation
Alig confidence													.	.	.	.	.	.
Template Conservation													.	.	.	.	.	.
Template Sequence		L	T	Y	A	S	V	K	P	V	P	A	.	.	.	.	.	.	L	D	N	S	D	R	S	Y	F	R	Y	H	R	A	N	D	D	H	T	L	L	I	T	G	P	I	Q	S	R	T	S	G	V	W	V	F	V	V	S	R	R	L	E	T	T	D	G	K	F	F	G	V	V	V	A	T	I	E	S	E	Y	F	S
Template Known Secondary structure						S	S	S	S				.	.	.	.	.	.		B		T	T	S																							T	T	T														T	T
Template Predicted Secondary structure													.	.	.	.	.	.
Template SS confidence
		121	.	.	.	.	.	.	.	.	130	.							.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.
		201	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.		.	.	.
Predicted Secondary structure																																																																														.
Query SS confidence																																																																														.
Query Sequence		N	M	R	R	L	A	W	Q	N	G	H	Y	F	T	L	R	T	T	F	N	Q	P	G	H	L	A	T	V	V	A	F	D	L	P	I	N	D	L	I	P	P	G	M	P	L	D	S	F	R	L	E	P	D	A	T	A	T	G	N	N	D	N	E	K	E	G	T	D	S	V	S	I	H	F	N	S	.	T	K	I
Query Conservation																																																																														.
Alig confidence										.	.	.	.	.	.	.	.	.	.	.	.	.	.																																																							.
Template Conservation										.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		T	F	Y	K	T	F	D	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	P	G	G	S	I	S	L	L	H	S	D	G	R	L	L	I	Q	W	P	S	L	Q	T	G	R	D	X	A	N	X	V	L	F	Q	K	A	L	P	R	S	P	D	G	Y	Y	L	T	V	S	P	F	D	G	L	T	K	Y
Template Known Secondary structure					T	T	S			.	.	.	.	.	.	.	.	.	.	.	.	.	.		T	T								T	T	S	B						T	T				S		B		T	T	S					T						S									T	T	T
Template Predicted Secondary structure										.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		195	.	.	.	.	200	.	.															.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260
		280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	I	S	S	A	L	N	S	T	D	M	R	L	V	W	Q	V	P	Y	G	T	L	L	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	A	Y	R	R	V	S	R	Y	P	L	V	V	T	V	A	R	T	E	D	S	V	L	S
Template Known Secondary structure								T	T	S	S
Template Predicted Secondary structure
Template SS confidence
		261	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions