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Job DescriptionP39838
Confidence94.60%DateThu Jan 5 12:01:06 GMT 2012
Rank212Aligned Residues235
% Identity11%Templatec3licA_
PDB info PDB header:signaling proteinChain: A: PDB Molecule:sensor protein; PDBTitle: crystal structure of the extracellular domain of the putative2 histidine kinase sohk1s-z6
Resolution2.30 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   41........50.........60.........70.........80.........90 .........100.........110........
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Query Sequence  AVNAWLKDKSYQIVDITHAIQKRVDNWRYVTWQIYDNIAATTSPSSGEGL. . QETRLKQDVYYLEKPRRKTEALIFGSHD
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Template Sequence  NYLSIEKRLYENLAQESSHSASRLQFLLEHAQANTQGLSDFIGLLADKDDINNPEKLKTVLTNRIQRNPDFFGSAIAFKP
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   36...40.........50.........60.........70.........80.........90.........100.........110.....
 
   119120.........130.........140.........150.........160.........170.........180.........190........
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Query Sequence  NSTLEMTQRMSTYLDTLWGAENVPWSMYYLNGQDNSLVLISTLPLKDLTSGFKESTVSDIVDSRRAEMLQQANALDERES
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Template Sequence  NT. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . FPNKKLFSPYVYRSGSGFNYLDIGADGYDYTDGNWDWWSKAINQVGGY
Template Known Secondary structure  TS..............................STT
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   116. ..120.........130.........140.........150.........160.....
 
   199200.........210.. .......220.........230.........240. ........250.
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Query Sequence  FSNMRRLAWQNGHY. FTLRTTFNQPGHLATVVAFDLPINDLIPP. . . . . . . . . . . . . . . . . . . . . . . . . . GMPLDSFRLE
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Template Conservation   
                       
   
     
                 


  
 

   
   
          
Template Sequence  WSKAYFDEGAGNVLXITYAVPFGVQPDYFGVTTVDLALDRLPEQLGIAPSRLVVLDDQGRLIFHSDKEKVLAGWLDKQNI
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   166...170.........180.........190.........200.........210.........220.........230.........240.....
 
   252.......260.........270.........280.........290.........300.....
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Query Sequence  PDATATGNNDNEKEGTDSVSIHFNSTKIEISSALNSTDMRLVWQVPYGTLLLDT
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Template Sequence  KNIAFATLLNDGQAGQASFVDDKGTVYLASVAEVAKLKWRVVVXVPKHELFASL
Template Known Secondary structure  GGT


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   250.........260.........270.........280.........290.........300...
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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