Job Description P39838 Confidence 91.07% Date Thu Jan 5 12:01:06 GMT 2012 Rank 225 Aligned Residues 236 % Identity 13% Template c3libA_ PDB info PDB header:signaling protein Chain: A: PDB Molecule:hypothetical sensory transduction histidine kinase; PDBTitle: crystal structure of the extracellular domain of the putative2 histidine kinase mmhk1s-z3 Resolution 2.99 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		47	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	D	K	S	Y	Q	I	V	D	I	T	H	A	I	Q	K	R	V	D	N	W	R	Y	V	T	W	Q	I	Y	D	N	I	A	A	T	T	S	P	S	S	G	E	G	L	Q	E	T	R	L	K	Q	D	V	Y	Y	L	E	K	P	R	R	K	T	E	A	L	I	F	G	S	H	D	N	S	T	L	E	M	T	Q
Query Conservation
Alig confidence																																					.	.																																							.	.	.	.	.
Template Conservation																																					.	.																																							.	.	.	.	.
Template Sequence		K	L	A	Y	Q	Q	S	V	E	M	A	S	N	Y	A	N	Q	F	D	A	D	M	K	A	N	L	A	I	A	R	T	I	S	T	T	.	.	M	E	S	Y	E	T	A	D	R	D	E	A	L	L	I	L	E	N	L	L	R	D	N	P	H	L	L	G	T	Y	V	A	F	E	P	D	A	F	.	.	.	.	.
Template Known Secondary structure																																					.	.						S																T		T	T		S							S	T	T	T	T	.	.	.	.	.
Template Predicted Secondary structure																																					.	.																																							.	.	.	.	.
Template SS confidence
		40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.			.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.
		127	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	M	S	T	Y	L	D	T	L	W	G	A	E	N	V	P	W	S	M	Y	Y	L	N	G	Q	D	N	S	L	V	L	I	S	T	L	P	L	K	D	L	T	S	G	F	K	E	S	T	V	S	D	I	V	D	S	R	R	A	E	M	L	Q	Q	A	N	A	L	D	E	R	E	S	F	S	N	M	R	R	L	A
Query Conservation
Alig confidence		.	.	.	.	.	.	.	.	.																					.	.	.	.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.																					.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	D	G	K	D	A	E	Y	T	N	S	P	A	H	D	G	T	G	R	F	V	.	.	.	.	.	.	.	.	.	P	Y	W	N	K	M	N	G	T	A	S	V	A	P	L	L	H	Y	D	S	S	D	Y	Y	Q	L	P	K	A	T	E	K	D	V	L	T	E	P	Y	F	Y	E
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	T	S						T	T	S	T	T			T	T					.	.	.	.	.	.	.	.	.						T	T	S	S							S		T	T	T	S											S										T
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.																					.	.	.	.	.	.	.	.	.
Template SS confidence
											113	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.										.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.
		207	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.							.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.
Predicted Secondary structure																																		.	.	.	.	.	.																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																		.	.	.	.	.	.																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		W	Q	N	G	H	Y	F	T	L	R	T	T	F	N	Q	P	G	H	L	A	T	V	V	A	F	D	L	P	I	N	D	L	.	.	.	.	.	.	I	P	P	G	M	P	L	D	S	F	R	L	E	P	D	A	T	A	T	G	N	N	D	N	E	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																																		.	.	.	.	.	.																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.																															.	.	.	.	.	.																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation		.	.
Template Sequence		.	.	G	V	F	M	V	S	Y	V	S	P	I	M	K	E	G	E	F	A	G	I	G	G	V	D	V	S	L	E	Y	V	D	E	V	V	S	K	V	R	T	F	D	T	G	Y	A	F	M	V	S	N	S	G	V	I	L	S	H	P	T	H	K	D	W	I	G	K	K	D	L	Y	D	F	G	G	E	E	L	E
Template Known Secondary structure		.	.	T													T	T																								B	T	T	T	B							T	T		B	B				S	S		T	T	T	T	T	T		B	T	T	T	S			S
Template Predicted Secondary structure		.	.
Template SS confidence
				175	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.
												264	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	K	E	G	T	D	S	V	S	I	H	F	N	S	T	K	I	E	I	S	S	A	L	N	S	T	D	M	R	L	V	W	Q	V	P	Y	G	T	L	L	L	D	T	L	Q	N	I
Query Conservation		.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		K	A	S	R	D	I	K	N	G	I	G	G	H	L	E	T	A	D	P	T	T	G	K	T	V	I	L	F	Y	E	P	V	E	T	G	D	F	A	F	V	L	V	V	P	K	E	E	M	L	A	G	V	A	D	L	R
Template Known Secondary structure									T	T										S	S	S												T	T	T	T																		T
Template Predicted Secondary structure
Template SS confidence
		253	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions