Job Description P39838 Confidence 99.83% Date Thu Jan 5 12:01:06 GMT 2012 Rank 24 Aligned Residues 178 % Identity 12% Template c2zbkB_ PDB info PDB header:isomerase Chain: B: PDB Molecule:type 2 dna topoisomerase 6 subunit b; PDBTitle: crystal structure of an intact type ii dna topoisomerase:2 insights into dna transfer mechanisms Resolution 3.56 Å

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		570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.					.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.		630	.	.	.	.	.	.	.	.	.	640		.	.	.
Predicted Secondary structure																					.	.	.	.																																										.												.
Query SS confidence																					.	.	.	.																																										.												.
Query Sequence		L	R	R	I	L	L	L	L	M	Q	Y	A	V	T	S	T	Q	L	G	.	.	.	.	K	I	T	L	E	V	D	Q	D	E	S	S	E	D	R	L	T	F	R	I	L	D	T	G	E	G	V	S	I	H	E	M	D	N	L	H	F	P	F	I	N	.	Q	T	Q	N	D	R	Y	G	K	A	D	.	P	L	A
Query Conservation																					.	.	.	.																																										.												.
Alig confidence																					.	.	.	.																																										.												.
Template Conservation
Template Sequence		L	Y	Q	T	V	R	E	L	I	E	N	S	L	D	A	T	D	V	H	G	I	L	P	N	I	K	I	T	I	D	L	I	D	D	A	R	Q	I	Y	K	V	N	V	V	D	N	G	I	G	I	P	P	Q	E	V	P	N	A	F	G	R	V	L	Y	S	S	K	Y	V	N	R	Q	T	R	G	M	Y	G	L	G
Template Known Secondary structure															T	T	T	T	T	T	T														T	T	T	T										S					G	G	G	S					T	S				S						S			S		S	S	S	S
Template Predicted Secondary structure
Template SS confidence
		32	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.
		644	.	.	.	.	.	650	.	.	.	.	.	.	.		.	.	660	.	.	.	.	.	.	.				.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.							.	.	.	.	.	700	.	.	.	.	.	.	.	.	.	710	.	.	.
Predicted Secondary structure																.											.	.	.																												.	.	.	.	.	.
Query SS confidence																.											.	.	.																												.	.	.	.	.	.
Query Sequence		F	W	L	S	D	Q	L	A	R	K	L	G	G	H	.	L	N	I	K	T	R	D	G	L	G	.	.	.	T	R	Y	S	V	H	I	K	M	L	A	A	D	P	E	V	E	E	E	E	E	R	L	L	D	D	V	.	.	.	.	.	.	C	V	M	V	D	V	T	S	A	E	I	R	N	I	V	T	R	Q	L
Query Conservation																.											.	.	.																												.	.	.	.	.	.
Alig confidence																.											.	.	.																												.	.	.	.	.	.
Template Conservation
Template Sequence		V	K	A	A	V	L	Y	S	Q	M	H	Q	D	K	P	I	E	I	E	T	S	P	V	N	S	K	R	I	Y	T	F	K	L	K	I	D	I	N	K	N	E	P	I	I	V	E	R	G	S	V	E	N	T	R	G	F	H	G	T	S	V	A	I	S	I	P	G	D	W	P	K	A	K	S	R	I	Y	E	Y	I
Template Known Secondary structure																								T	T		S											T	T	T	T														S	S
Template Predicted Secondary structure
Template SS confidence
		112	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.
		714	.	.						.	.	.	720	.	.	.	.	.	.	.	.	.							730	.	.	.	.	.	.	.	.	.	740	.	.	.	.	.	.	.
Predicted Secondary structure					.	.	.	.	.														.	.	.	.	.	.
Query SS confidence					.	.	.	.	.														.	.	.	.	.	.
Query Sequence		E	N	W	.	.	.	.	.	G	A	T	C	I	T	P	D	E	R	L	I	S	.	.	.	.	.	.	Q	D	Y	D	I	F	L	T	D	N	P	S	N	L	T	A	S	G
Query Conservation					.	.	.	.	.														.	.	.	.	.	.
Alig confidence					.	.	.	.	.														.	.	.	.	.	.
Template Conservation
Template Sequence		K	R	T	Y	I	I	T	P	Y	A	E	F	I	F	K	D	P	E	G	N	V	T	Y	Y	P	R	L	T	N	K	I	P	K	P	P	Q	E	V	K	P	H	P	Y	G	V
Template Known Secondary structure									T	T								T	T	S																							G	G	G
Template Predicted Secondary structure
Template SS confidence
		192	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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